Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu8g01128 ATGGAGTTTGATCCAAGTTTCCAAGGGCAACTACAACACCCATTCCTTTCAACTCATTTCCCTACAAACCCTAACATGATGCCACAAATCCAAACCATGTTTCCCTCACAAAGCCCTATTTTGATTCCACCATCACCACCATCACCACCCATCATGTTTCACCCCAACAACATTTTCCACCATATTCAAGATCACACCTTTGGGGTACCTACCCAAAACCCTAACTTTTTGTTTGAGGGTCCTTTAAAACCCACCACAACCCCTTTTTATGGGATGTTAACACCTTCTTTAGGGTCTTCCCTAGGAGGTTTTGCCAATGCTTCTCATCACCATCCTATGATGTTGCCACCACCAAACAACAACAACAATGTTTTGCATGGCCAACATGATGGCAAAGTCATATGGGATTTTTCTCAAAAAACCATGATTCATCCATCTCATGCTTCTTCTTCTTCCAACTCACCTTCGTGTCTTTCTCTTCCTAATATCACTCAATACAAATGGGAAAGTAATCAAAAGATAAAAATGAAAAAAAATACTAATGATCTCATAATCAAAGGATGGTGGACTCCTCAAGAGGACAGTAATCTTGTGGAATTGGTGAATGAATTTGGGTTGAAGAAATGGACCCAAATTGCAAAATTTCTACCCGGAAGGATTGGGAAGCAATGTCGAGAAAGATGGTACAACCATCTTCAGCCAAACATTAAGAAGGAATCATGGACACTGGAAGAAGACATGATTCTGATGAAAGTTCATCAAGAAATTGGAAACAAATGGTCTGAAATTGCAAAAAGATTACCTGGGAGAACTGAGAACAACATAAAAAACCATTGGAATGGTATCAAGCGTCGACAAGACTATAAAAAGAACAACAACAAGAACAACAATGATAACCCTAATTACCCTAATTACGATGAATCAATGCTCCATGCATACATCAAAAGGGTCACTGTTACTGAAGAAGCTGCAAGAGTTCAGAAGAAATATGTCAGCAAGAATAATAAGAAGGATCAATGTTCATATAACATGCTTGATGGAAATAGCAATTTAGCTAGGAATGTGGGTATATGA 1074 0.3864 MEFDPSFQGQLQHPFLSTHFPTNPNMMPQIQTMFPSQSPILIPPSPPSPPIMFHPNNIFHHIQDHTFGVPTQNPNFLFEGPLKPTTTPFYGMLTPSLGSSLGGFANASHHHPMMLPPPNNNNNVLHGQHDGKVIWDFSQKTMIHPSHASSSSNSPSCLSLPNITQYKWESNQKIKMKKNTNDLIIKGWWTPQEDSNLVELVNEFGLKKWTQIAKFLPGRIGKQCRERWYNHLQPNIKKESWTLEEDMILMKVHQEIGNKWSEIAKRLPGRTENNIKNHWNGIKRRQDYKKNNNKNNNDNPNYPNYDESMLHAYIKRVTVTEEAARVQKKYVSKNNKKDQCSYNMLDGNSNLARNVGI 357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu8g01128 357 Gene3D - 185 237 - -
Vimu8g01128 357 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 237 287 IPR017930 -
Vimu8g01128 357 ProSiteProfiles Myb-like domain profile. 186 232 IPR001005 -
Vimu8g01128 357 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 181 236 IPR017930 -
Vimu8g01128 357 SMART sant 237 285 IPR001005 -
Vimu8g01128 357 SMART sant 185 234 IPR001005 -
Vimu8g01128 357 Pfam Myb-like DNA-binding domain 189 246 - -
Vimu8g01128 357 SUPERFAMILY Homeodomain-like 185 279 IPR009057 -
Vimu8g01128 357 CDD SANT 240 283 IPR001005 -
Vimu8g01128 357 ProSiteProfiles Myb-like domain profile. 233 283 IPR001005 -
Vimu8g01128 357 Gene3D - 239 301 - -
Vimu8g01128 357 MobiDBLite consensus disorder prediction 274 304 - -
Vimu8g01128 357 FunFam Transcriptional activator Myb isoform A 185 238 - -
Vimu8g01128 357 CDD SANT 189 232 IPR001005 -
Vimu8g01128 357 PANTHER MYB PROTEIN-RELATED 157 301 - -
Vimu8g01128 357 MobiDBLite consensus disorder prediction 274 292 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu8g01128 Vimu-Chr8 18278365 18281145 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu8g01128 177 338 MYB Transcription Factor Family AT4G18770 51.205 7.46e-50 171
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vimu8g01128 Myb_DNA-binding 3.9e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu8g01128 K09422 - gmx:102666249 315.464