Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu8g01124 ATGGCCGCCACAGCAACTGCCTCTTCAATGGGTCCGCGGTATGCACCACCAGATCCGACACTCCCTAAACCATGGAAGGGTCTTGTGGATGGCAAGACTGGTTATCTTTACTTTTGGAATCCCGAGACCAATGTCACCCAGTATGAGAGGCCCTCGAGCTCAGCTGCTCCACCAAAGTCCTCTTCAGTGCCTAGCTCTTCTGTCCAGGTTCAACATACGTCTCAAGGGTCGCAACGTGGTCGTAGTCCTGATTTCAGTGATAGGTATGATAGAAATGGCAGTGGTGGGTCAACTGATGCTTCACGGAATAATCAGAGTTCCAAAGGTGGAAGTTACAGTTCTCATAGTGTGCCAACTGGAACAAATGCTGCTGCCAATGTTAGTTATTCTGTCAAAGGTCATGGGGCATCGGATGCTGCAGCTGTGCTTTCTCCTGAGTCTTATCGAAGTCGGCATGAAATAACTGTGACTGGAGACAATGTGCCACCGCCTCTTGCTTCATTTGGGTCTAGTGGCTTTCCACCGGAGGTTCTGAGAGAGTTAGGCGGGTACCCAGCTTCCATAGGTGCGATATTTGCTCCTGGGGAGGAGCTAATGTCGTACGGGCTTTCCGAATCATCCAAGTTCGTGGCTGGGACTGCTGTTGGTCATGATTCAGTCTGCCACTTGGTCTGTACGGAAGAAGAGGCCTCCTCATGCGCTACCTTGCATCAGCAAGCATTGGTACAAAATGCTGGTTTCTCAGCCCCAACTCCAATTCAGGCACAGTCATGGCCCATTGCTCTTCAAAGTAGAGATATAGTTGCCATTGCAAAAACAGGCTCAGGGAAAACCTTGGGATATTTAATTCCAGCATTTGTTCACCTCAAGCGCTGTGGTAATAACTCAAAAATGGGCCCCACTGCATTGGTACTTTCACCAACAAGGGAGTTGGCGACACAAATACAAGATGAGGCTGTGAAGTTTGGGAAATCTTCAAGAATTTCTTGTGCATGTTTGTATGGAGGAGCACCCAAGGGTCCTCAACTCAGAGACATTGACCGGGGAGCAGATATTGTGGTAGCCACTCCTGGTCGCTTGAATGATATTCTTGAGATGAGAAGAATTAGTCTTCATCAGGTCTCTTACCTGGTGCTAGATGAGGCAGACCGGATGCTGGATATGGGTTTCGAACCTCAAATTAGGAAAATTGTTAATGAGGTGCCTAATCGCAGGCAAACACTCATGTTTACTGCAACTTGGCCAAAGGAGGTTCGGAAAATTGCAGCTGATCTACTGGTCAAACCTGTCCAGGTGAACATTGGCAATGTGGACGAGCTTGTTGCTAACAAGTCCATTACTCAGCATGTTGAAGTGTTGCCCCTGATGGAGAAACAGAGACGTCTGGAACATATTTTACGGTCACAGGATCAAGGATCAAAGATAATTATATTCTGTTCTACCAAGAAAATGTGTGATCAACTTGCTCGTACTCTGACTCGTCAGTTCGGAGCTGCTGCTATACATGGGGATAAATCCCAGGCTGAGAGGGATCACGTGTTGAGTCAGTTTCGAACTGGGAGGTCACCTGTTCTTGTAGCTACAGATGTTGCTGCCCGGGGACTGGATATCAAGGACATTAGGGTGGTTGTCAATTACGACTTCCCCACAGGAGTTGAAGACTATGTTCATAGGATTGGAAGGACTGGGAGGGCTGGAGCCACTGGGCTAGCTTACACTTTCTTTGGTGACCAGGATGCAAAATATGCTACGGATCTCATCAAAGTTTTGGAAGGTGCAAATCAGAAAGTACCTCCAGAACTTCGTGATATGTCATCACGGGGTGGTAGTGGGATGGGAAGATCCAGACGATGGGGTTCTGGTGGAAGAGGTGGACGCAGTGATTCTGGATATGGTGGAAGGAATAATGACTCAGGATATGGTGGAAGGGGTAGTGATTCAAATTATGGAGCTAGGGGAAATGCTTCTTCTGGGAGAGGAGGTCGTGGTTTTGACTATGATTCTCAGAGGAATGATCGGGGTCTGAGTCCAGACAAGGGATCTAAATGGAGCGATCGCTACAAAAGCGTCAACCGTGAACGTAGTCGTAGCCCTGACAGGGCTGCACTACCTCAACATTCCCAAAGCAGCTTTCACAAGGCAATGATGGAACGTGGTGGATGGGGTGACAGTGATCGCAATAAGAGCTCTAACAGAGATCGAAGCCGCAGTCCTAGCCCCTACAGACAGGAAAGGACCGCAGCAGTTCGTGAACGATCCCCAGTAAACAGTTTTCATCGATCGATGATGGGACAAGGACAATCATCCCCACCACGGCAGCGTGCACGTAGTCCTTATCGAAACTCTTCACCCTCCCAGGGCGGTGGTAGGTCTTATAATAGTCCTCCAAAAGAGTGGGGAGGCAATGGCGGAGAGGTGGAGGAAGGGATGATTCCAGAGGAAGATGGAATTATAGGTCAAGGTGGAGATTAG 2472 0.4867 MAATATASSMGPRYAPPDPTLPKPWKGLVDGKTGYLYFWNPETNVTQYERPSSSAAPPKSSSVPSSSVQVQHTSQGSQRGRSPDFSDRYDRNGSGGSTDASRNNQSSKGGSYSSHSVPTGTNAAANVSYSVKGHGASDAAAVLSPESYRSRHEITVTGDNVPPPLASFGSSGFPPEVLRELGGYPASIGAIFAPGEELMSYGLSESSKFVAGTAVGHDSVCHLVCTEEEASSCATLHQQALVQNAGFSAPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLIPAFVHLKRCGNNSKMGPTALVLSPTRELATQIQDEAVKFGKSSRISCACLYGGAPKGPQLRDIDRGADIVVATPGRLNDILEMRRISLHQVSYLVLDEADRMLDMGFEPQIRKIVNEVPNRRQTLMFTATWPKEVRKIAADLLVKPVQVNIGNVDELVANKSITQHVEVLPLMEKQRRLEHILRSQDQGSKIIIFCSTKKMCDQLARTLTRQFGAAAIHGDKSQAERDHVLSQFRTGRSPVLVATDVAARGLDIKDIRVVVNYDFPTGVEDYVHRIGRTGRAGATGLAYTFFGDQDAKYATDLIKVLEGANQKVPPELRDMSSRGGSGMGRSRRWGSGGRGGRSDSGYGGRNNDSGYGGRGSDSNYGARGNASSGRGGRGFDYDSQRNDRGLSPDKGSKWSDRYKSVNRERSRSPDRAALPQHSQSSFHKAMMERGGWGDSDRNKSSNRDRSRSPSPYRQERTAAVRERSPVNSFHRSMMGQGQSSPPRQRARSPYRNSSPSQGGGRSYNSPPKEWGGNGGEVEEGMIPEEDGIIGQGGD 823
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu8g01124 823 SMART ww_5 20 53 IPR001202 GO:0005515
Vimu8g01124 823 MobiDBLite consensus disorder prediction 597 823 - -
Vimu8g01124 823 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 258 432 IPR014001 -
Vimu8g01124 823 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 378 386 IPR000629 -
Vimu8g01124 823 Pfam WW domain 21 51 IPR001202 GO:0005515
Vimu8g01124 823 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 461 605 IPR001650 -
Vimu8g01124 823 MobiDBLite consensus disorder prediction 718 749 - -
Vimu8g01124 823 Gene3D - 437 608 IPR027417 -
Vimu8g01124 823 MobiDBLite consensus disorder prediction 665 700 - -
Vimu8g01124 823 Gene3D - 142 436 IPR027417 -
Vimu8g01124 823 ProSitePatterns WW/rsp5/WWP domain signature. 25 51 IPR001202 GO:0005515
Vimu8g01124 823 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 299 583 IPR027417 -
Vimu8g01124 823 MobiDBLite consensus disorder prediction 91 119 - -
Vimu8g01124 823 SMART ultradead3 246 449 IPR014001 -
Vimu8g01124 823 Gene3D - 17 64 - -
Vimu8g01124 823 MobiDBLite consensus disorder prediction 758 792 - -
Vimu8g01124 823 MobiDBLite consensus disorder prediction 47 82 - -
Vimu8g01124 823 MobiDBLite consensus disorder prediction 1 27 - -
Vimu8g01124 823 SMART helicmild6 486 566 IPR001650 -
Vimu8g01124 823 Pfam Helicase conserved C-terminal domain 458 566 IPR001650 -
Vimu8g01124 823 ProSiteProfiles WW/rsp5/WWP domain profile. 19 53 IPR001202 GO:0005515
Vimu8g01124 823 FunFam ATP-dependent RNA helicase RhlB 436 608 - -
Vimu8g01124 823 Pfam DEAD/DEAH box helicase 251 421 IPR011545 GO:0003676|GO:0005524
Vimu8g01124 823 SUPERFAMILY WW domain 12 52 IPR036020 GO:0005515
Vimu8g01124 823 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 233 605 - -
Vimu8g01124 823 CDD WW 22 50 IPR001202 GO:0005515
Vimu8g01124 823 CDD SF2_C_DEAD 446 575 - -
Vimu8g01124 823 MobiDBLite consensus disorder prediction 47 119 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu8g01124 Vimu-Chr8 18259034 18263099 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu8g01124 242 604 Eukaryotic Initiation Factors Gene Family AT3G19760 32.880 2.84e-60 208
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu8g01124 K12823 - gmx:100816455 1151.73