Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu8g01119 ATGAGGTGGTCCAAAATTGCAAAGCATCTTCCAGGAAGAACTGACAATGAGATTAAGAACTTTTGGAGAACCAGAATCCAGAAGCATATGAAGCAAGCTGAAAATTCACAGCAACAGGGTAATAATAACAGTAACATTTCAGAGACAAATGATCATCATCATCATCACCATCAACATCATCATCATCAACAACATCATCATCAAGCCAGCTCTAGCACAAGCCTAGCATCCAACATGGCACTGCAAATTGAGTCTTACTCCACACCCTCATATCAAGAAAGTTTGGAGCCATTTCCATCACAGTTTCCTCCAATCACTGATCAATCAAGTTCATGTACCAATCACAACATCAACACCAACACCAACTATTGGAACATAGAGGATTTGTGGTCTATGCATATTCTTAATGGGGACTAA 417 0.3957 MRWSKIAKHLPGRTDNEIKNFWRTRIQKHMKQAENSQQQGNNNSNISETNDHHHHHHQHHHHQQHHHQASSSTSLASNMALQIESYSTPSYQESLEPFPSQFPPITDQSSSCTNHNINTNTNYWNIEDLWSMHILNGD 138
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu8g01119 138 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 2 109 IPR044676 GO:0003700|GO:0006355|GO:0043565
Vimu8g01119 138 ProSiteProfiles Myb-like domain profile. 1 26 IPR001005 -
Vimu8g01119 138 MobiDBLite consensus disorder prediction 31 47 - -
Vimu8g01119 138 MobiDBLite consensus disorder prediction 53 67 - -
Vimu8g01119 138 Gene3D - 1 29 - -
Vimu8g01119 138 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 30 IPR017930 -
Vimu8g01119 138 CDD SANT 2 24 IPR001005 -
Vimu8g01119 138 MobiDBLite consensus disorder prediction 29 74 - -
Vimu8g01119 138 SUPERFAMILY Homeodomain-like 2 34 IPR009057 -
Vimu8g01119 138 Pfam Myb-like DNA-binding domain 2 24 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu8g01119 Vimu-Chr8 18188548 18189499 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu8g01119 2 138 MYB Transcription Factor Family AT3G01530 41.606 2.95e-25 93.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Vimu8g01119 Myb_DNA-binding 3.1e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu8g01119 K09422 - gmx:100305972 140.584