Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu8g01114 ATGGTGTGTAGGACATGTGGGAAGAAGGGTGATCACTGGACTTCAAGGTGTCCATACAAGGATCTAGCCCCACCATCTGAGGGATTTGTGGATAAGCCTGCAACATTAGATGCTGCAGCAGCAACAGGTGGTGCAACCAAGGGAGCCTACGTGCCTCCTGGTATGAGGGCAGGGGCTGAGAGGAGTGGTGGATCTGATATGCGGCGCAGGAACGATGAGAACTCTGTAAGGGTAACCAACCTCTCTGAAGACACAAGAGAGCCTGATTTGATGGAGCTGTTCCGTCCTTTTGGTCCTGTAAGCAGAGTTTATGTTGCCATTGATCAAAAGACCAGCATGAGCAGAGGTTTTGGCTTTGTGAATTTTGTGAACAGGGAAGATGCTCAACGGGCTATCACCAAACTCAATGGGTATGGATACGACAATCTCATACTCAGAGTTGAATGGGCAACCCCAAGGGCGAGCTAG 468 0.5 MVCRTCGKKGDHWTSRCPYKDLAPPSEGFVDKPATLDAAAATGGATKGAYVPPGMRAGAERSGGSDMRRRNDENSVRVTNLSEDTREPDLMELFRPFGPVSRVYVAIDQKTSMSRGFGFVNFVNREDAQRAITKLNGYGYDNLILRVEWATPRAS 155
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu8g01114 155 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT G 17 151 - -
Vimu8g01114 155 SMART rrm1_1 75 148 IPR000504 GO:0003723
Vimu8g01114 155 Gene3D - 47 155 IPR012677 -
Vimu8g01114 155 Pfam Eukaryotic translation initiation factor 3 subunit G 1 22 IPR024675 -
Vimu8g01114 155 CDD RRM_eIF3G_like 75 150 IPR034240 -
Vimu8g01114 155 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 74 152 IPR000504 GO:0003723
Vimu8g01114 155 MobiDBLite consensus disorder prediction 62 83 - -
Vimu8g01114 155 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 76 142 IPR000504 GO:0003723
Vimu8g01114 155 SUPERFAMILY RNA-binding domain, RBD 60 153 IPR035979 GO:0003676
Vimu8g01114 155 MobiDBLite consensus disorder prediction 45 83 - -
Vimu8g01114 155 FunFam Eukaryotic translation initiation factor 3 subunit G 38 155 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu8g01114 Vimu-Chr8 18144479 18144946 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu8g01114 1 153 Eukaryotic Initiation Factors Gene Family AT3G11400 79.487 7.51e-88 258
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu8g01114 K03248 - gmx:100818725 300.827