Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu8g01110 ATGGAGCATGTTTTGGAAAAAAGATTCCCTCTTAATGCAGAAGATTACAAGTTATATGAAGAAGTTGGTGAAGGCGTTAGTGCCTCCGTATACAGGGCTCTTTGTGTTCCTCTCAACGAGATAGTTGCAATCAAGGTTCTGGATCTAGAGAAGTGCAATAATGATTTGGATGGAATTCGAAGAGAGGTACAGACGATGAGCTTGATTGATCATCCAAATGTTTTACAGGCACATTGCTCTTTTACTACTGGACACAATCTATGGGTTGTAATGCCATACATGGCAGGGGGTTCTTGCCTCCATATAATGAAATCTGCCTATCCAGAAGGTTTTGAAGAGCCAGTTATTGCTACTTTATTGCATGAAGTTCTCAAAGCTCTTGTTTATCTTCATGCCCATGGTCACATACATAGAGATGTTAAGGCGGGGAATATTCTGCTTGATTCTAATGGTGCAGTCAAATTAGCTGACTTTGGAGTGTCAGCATGTATGTTTGATACTGGAGACAGGCAACGTTCAAGGAACACTTTTGTTGGAACACCTTGCTGGATGGCTCCCGAAGTCATGCAGCAATTACATGGATATGATTTTAAAGCAGATATATGGTCATTTGGTATAACAGCACTTGAACTTGCTCATGGCCATGCCCCATTTTCCAAGTATCCACCTATGAAAGTTTTGCTTATGACTTTACAAAATGCCCCTCCAGGTCTTGATTATGAAAGAGACAAGAGATTTTCAAAGGCTTTCAAGGAGTTGGTTGCCACCTGCTTAGTAAAAGACCCAAAAAAGCGTCCTAGTTCAGAAAAGCTATTAAAGCACCACTTCTTTAGACATGCACGTGCTAGCAAATATCTTGCTCGCACCATTCTAGATGGGCTTGCTCCTTTAGGAGATCGTTTTAGATCACTGAAGGCTAAAGAGGCAGATTTATTGGTGCAGAACAAGGCTCTTTATGAGGATAAGGATCAGTTATCTCAGAAAGAATATATTCGAGGAATTAGTGCCTGGAATTTTAACCTGGAAGATTTAAAAAGTCAAGCTGCTCTTATTCAAGATGATGACATACCTAATGTAGATGAGCCACAAAAGGATAAGAAGGAAAAAGTCAGATCGGATGACTTCAGGGATTCTGCAGAGACGTTATCATCTGTAACAGCTAATCATTCAGATGATGCACCCACTCAGAACAAGGAGGATGGATTTAATAATCTTCAGGATTTGGAGGGTTCGCTTGCTTCATTTCCTAGTAAACCTCTTCAAGCACTTAAGTATGTTTATCTTCTCCGCGGAAACACTGCTGGTTGTATGTTAGAAATTGGGTTGTTCGATGATGTTAATAACAACAGTCCAAGAGATCTGGATCATGATTATGGAAATGAAAGTTCTGGGCCAAGTTCTTCATTACAACAAAACGCTAACAATCAGCAAAAAAAGTTTCCGAGTGTTGATGACACATCAGATGGAGCGTTTGTCCAGCGTAGGGGGCGGTTTAAGGTCACATCGGCTGATCTCAGTCCAATGGGTCCTTCAAACAATGCTTCTGGCCCAGTTGTTAGTCCTACCAGCCCACCAAATCAAAATTTCGTGGCTGGCGCTATTCTTCCATCGCTTCAGTGCATCTTGCAACAGAATGGTTTGCAAAGGGTACTTTTTTGA 1659 0.4117 MEHVLEKRFPLNAEDYKLYEEVGEGVSASVYRALCVPLNEIVAIKVLDLEKCNNDLDGIRREVQTMSLIDHPNVLQAHCSFTTGHNLWVVMPYMAGGSCLHIMKSAYPEGFEEPVIATLLHEVLKALVYLHAHGHIHRDVKAGNILLDSNGAVKLADFGVSACMFDTGDRQRSRNTFVGTPCWMAPEVMQQLHGYDFKADIWSFGITALELAHGHAPFSKYPPMKVLLMTLQNAPPGLDYERDKRFSKAFKELVATCLVKDPKKRPSSEKLLKHHFFRHARASKYLARTILDGLAPLGDRFRSLKAKEADLLVQNKALYEDKDQLSQKEYIRGISAWNFNLEDLKSQAALIQDDDIPNVDEPQKDKKEKVRSDDFRDSAETLSSVTANHSDDAPTQNKEDGFNNLQDLEGSLASFPSKPLQALKYVYLLRGNTAGCMLEIGLFDDVNNNSPRDLDHDYGNESSGPSSSLQQNANNQQKKFPSVDDTSDGAFVQRRGRFKVTSADLSPMGPSNNASGPVVSPTSPPNQNFVAGAILPSLQCILQQNGLQRVLF 552
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu8g01110 552 FunFam serine/threonine-protein kinase BLUS1 isoform X1 97 330 - -
Vimu8g01110 552 MobiDBLite consensus disorder prediction 460 483 - -
Vimu8g01110 552 MobiDBLite consensus disorder prediction 505 523 - -
Vimu8g01110 552 MobiDBLite consensus disorder prediction 357 378 - -
Vimu8g01110 552 PANTHER SERINE/THREONINE-PROTEIN KINASE FRAY2 7 549 IPR047173 GO:0043539
Vimu8g01110 552 MobiDBLite consensus disorder prediction 501 523 - -
Vimu8g01110 552 ProSitePatterns Protein kinases ATP-binding region signature. 22 45 IPR017441 GO:0005524
Vimu8g01110 552 ProSiteProfiles Protein kinase domain profile. 16 277 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu8g01110 552 SUPERFAMILY Protein kinase-like (PK-like) 13 301 IPR011009 -
Vimu8g01110 552 SMART serkin_6 16 277 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu8g01110 552 Gene3D Transferase(Phosphotransferase) domain 1 97 317 - -
Vimu8g01110 552 MobiDBLite consensus disorder prediction 379 404 - -
Vimu8g01110 552 Gene3D Phosphorylase Kinase; domain 1 5 92 - -
Vimu8g01110 552 Pfam Protein kinase domain 16 277 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu8g01110 552 FunFam Serine/threonine-protein kinase BLUS1 5 93 - -
Vimu8g01110 552 MobiDBLite consensus disorder prediction 451 488 - -
Vimu8g01110 552 MobiDBLite consensus disorder prediction 352 404 - -
Vimu8g01110 552 CDD STKc_OSR1_SPAK 14 277 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu8g01110 Vimu-Chr8 18114303 18119181 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu8g01110 1 549 MAP Kinase Kinase Kinase Kinase AT5G14720 64.784 0.0 761
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE20-Fray Vimu8g01110 Pkinase 1.9e-59 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu8g01110 K08835 - gmx:100778837 942.569