Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu8g01108 ATGCCTGGAGGGAGCAGCAAAAGGAGGATACATTTTAGCAAACTGTACAGTTTTTCTTGTTTGAAATCTCCTTTCAGAGATGGTCATTCCCAAATTGGGCAGAAGGGGTACTCCAGGGTTGTGTACTGCAATGATCCAGATAACCCTGAAGCAGTTCAGTTGAGTTATGGAGGCAATTATGTTTCAACAACCAAGTATACAGCTTTTAATTTTATCCCCAAGTCTTTGTTTGAGCAGTTCAGGAGGGTTGCAAATATCTACTTTCTCATTGTTGCGTGTGTTTCATTTAGTCCATTGGCACCTTTTACTGCTCTGAGTATTGTTGCTCCATTGCTGGTTGTGATTGGAGCTACTATGGCCAAGGAAGCTGTGGAAGATTGGAGGAGGAGAAAACAGGATGTAGAGGCAAACAACAGAAAGGTTCAGGTATATGGTAGAAATTATACGTTTACTGAGACTAGATGGAAGAAACTCCGTGTTGGGGATATCATTAAAGTGTACAAGGATGAATACTTTCCTGCAGATCTTCTTTTGCTTTCATCAAGGTATGGTGATGGGGTTTGTTATGTCGAGACTATGAATCTTGATGGAGAAACTAATCTAAAATTAAAGCATGCTTTGGAGGTGACAGTTCATCTTCATGATGAAAAATCTCTACAAAAGTTTAGGGCTATGGTTAAATGTGAGGATCCTAATGAAAATCTGTACTCATTTATTGGAACTTTACAACATGATGGTAAAGAATATCCTCTTTCCTTGCAGCAGATCCTGTTAAGAGATTCTAAGTTGAAAAACACTGATTTTATCTATGGCATTGTTATCTTTACTGGCCATGATACGAAGGTTATGCAGAATTCCACTGATCCTCCTTCCAAGAGAAGCAAAATTGAGAGGAAAATGGATAAGATAATCTACATCCTCTTCAGTACCTTGGTTTTGATATCCTTTATTGGTTCTGTCTTTTTTGGTATTGAAACCAAAAAGGATATCAGTGGTGGAAGTTATAGAAGATGGTATCTTCGTCCAGACAATGCAACAGTGTTCTATGATCCCAGAAGGGCAACACTTGCTGCTGTTCTTCATTTTTTGACTGCCATTATGTTGTATGGATATCTAATTCCGATATCACTTTACGTGTCCATAGAAATTGTGAAAGTTCTACAGTGCATTTTCATCAACCAAGACCAAGAAATGTATCATGAAGAATCAGATAGGCCTGCTCATGCACGCACATCAAATTTGAATGAAGAACTTGGCCAGGTTGATACAATATTGAGTGACAAAACTGGTACTTTGACATGTAACTCAATGGAGTTTGTCAAATGTTCAATAGGGGGCATTGCATATGGTCGCGGTATGACAGAAGTAGAGAAGGCACTTGCTAGGAGAGGAAAAGGTGGGGAATCTGATGATGTTGATAGTGGATCATCTGATTTCTTGGGCCAGAATAATGAGTCTGTTGATTCTCTGCATCCGGTTAAGGGCTTTAATTTTAGCGATGAGCGCCTAGTGAATGGGCAATGGGTTAATGAACCATATCCAGATTTCATACAGAAATTCTTCCGAGTTTTAGCTATTTGTCACACAGCTATTCCAGACAAAGATAAAGAATCCGGAGAAATTTCCTATGAAGCCGAGTCACCAGATGAAGCAGCTTTTGTCATAGCAGCAAGGGAGCTCGGTTTTGAGTTTTTTGCAAGGACACAAACAAGCATATCATTGCACGAATTGAACTATGAAAGTGGAAAAAAGGTTGACAGAGTGTACCAGCTTCTGCATGTCTTGGAGTTCAGCAGTTCCCGCAAAAGAATGTCAGTGATAGTGAGGAATGAGGAAAATCAAATATTGCTTCTATGCAAGGGTGCAGACAGTGTAATGTTTGAAAGGCTCTCACAACATGGAAGACAATTTGAGGTTGAAACAAGGGATCATATCAAAAGGTATGCCGAGGCTGGTTTAAGAACCCTTGTAGTCACATACCGTGAACTTGATGAAGAAGAATATAAGTTATGGGATAAGGAGTTTTCAAAGGTCAAAACTTCTGTAACAGAAGACCAAGATACACTTGTGGATGCCGCTGCTGATAGGATGGAAAGAGATTTGATACTTCTTGGTGCTACTGCAGTTGAGGATAGACTGCAAAAGGGGGTTCCAGAGTGTATTGAAAAGCTTGCACGGGCAAAAATCAAGTTATGGGTATTGACTGGAGACAAGATGGAAACTGCTGTCAACATAGGGTATGCTTGCAGTTTACTTAGAAAAGACATGAAGCAGATAGTGATCACTCTTGATTCCTCAGATATCATATACTTGGAAAAACAAGGCGACAAGCAGGCTCTAGCAAAGGCTTCTCTTGAAAGCATTAAGGAACAAATTGGAGAAGGAATCTCACAAATTAACTCTGCAAAAGAGAGTTCTAATGCAAATAAAGGAAGTTCTTCTGGGTTTGGCCTTATAATCGATGGGAAGTCCTTGGATTATTCTCTTAACAAGAATTTGGAAAGGTCCTTCTTTGAGCTTGCCATTAATTGTGCTTCTGTCATATGTTGCCGATCTTCACCCAAACAAAAAGCTCGTGTTACAAGGTTGGTAAAATTGCGAACGGGGAAGACAACATTATCTATTGGTGATGGGGCAAATGATGTTGGCATGCTTCAGGAGGCTGATATTGGAGTTGGTATCAGTGGTGCTGAAGGGATGCAGGCTGTAATGGCAAGTGATTTTGCAATAGCTCAATTCCGGTTTCTAGAGCGTCTTTTGTTGGTTCATGGTCATTGGTGTTATCGGCGTATATCAATGATGATATGCTATTTTTTCTATAAAAACATTGCATTTGGATTTACCCTTTTTTGGTTTGAGGCGTATGCTTCTTTCTCTGGTCAAGCTGCTTACAATGATTGGTACATGTCATTTTACAATGTCTTCTTCACTTCACTTCCAGTGATCGCTCTAGGTGTTTTTGATCAAGATGTTTCTGCCAAACTTTGCCTAAAGTATCCCTTTCTATATCTAGAGGGAGTAGAAGACACCCTGTTCAGCTGGCCCCGGATTCTAGGGTGGATGTTGAATGGAGTCCTTAGTTCTTTAGTAATATTCTTCTTAACCACTAATTCTGTGTTGAATCAAGCCTTCAGAAGAGATGGTAAGGTGGTTGATTTTGAAATACTTGGGGTCACAATGTATACATGTGTGGTCTGGACTGTGAATTGCCAAATGGCATTATCCATCAATTACTTTACATGGATACAACATTTTTTTATATGGGGCAGCATCGCTTTCTGGTATGTATTTGTGTTGGTCTATGGTTACTTATCTCCAGCAATATCCACAACATCTTACATGGTTTTTGTGGAAGCATGTGCTCCCAGTGGTCTCTATTGGCTAGTAACCCTTTTGGTTGTTGTGTGTGTGCTGCTACCCTATTTCTCCTATAGGTCTTTCCAAAGTCGGTTTCTTCCAATGTACCATGATATTATACAGAGAAAACAAGTAGAAGGGATTGAAATTGGCTTATCTGATGATGATTTACCTAAACAGGTCCAAGGAAAACTAATACACCTCAGAGAGAGATTGAAGCAAAGGGAGTTATGA 3591 0.3977 MPGGSSKRRIHFSKLYSFSCLKSPFRDGHSQIGQKGYSRVVYCNDPDNPEAVQLSYGGNYVSTTKYTAFNFIPKSLFEQFRRVANIYFLIVACVSFSPLAPFTALSIVAPLLVVIGATMAKEAVEDWRRRKQDVEANNRKVQVYGRNYTFTETRWKKLRVGDIIKVYKDEYFPADLLLLSSRYGDGVCYVETMNLDGETNLKLKHALEVTVHLHDEKSLQKFRAMVKCEDPNENLYSFIGTLQHDGKEYPLSLQQILLRDSKLKNTDFIYGIVIFTGHDTKVMQNSTDPPSKRSKIERKMDKIIYILFSTLVLISFIGSVFFGIETKKDISGGSYRRWYLRPDNATVFYDPRRATLAAVLHFLTAIMLYGYLIPISLYVSIEIVKVLQCIFINQDQEMYHEESDRPAHARTSNLNEELGQVDTILSDKTGTLTCNSMEFVKCSIGGIAYGRGMTEVEKALARRGKGGESDDVDSGSSDFLGQNNESVDSLHPVKGFNFSDERLVNGQWVNEPYPDFIQKFFRVLAICHTAIPDKDKESGEISYEAESPDEAAFVIAARELGFEFFARTQTSISLHELNYESGKKVDRVYQLLHVLEFSSSRKRMSVIVRNEENQILLLCKGADSVMFERLSQHGRQFEVETRDHIKRYAEAGLRTLVVTYRELDEEEYKLWDKEFSKVKTSVTEDQDTLVDAAADRMERDLILLGATAVEDRLQKGVPECIEKLARAKIKLWVLTGDKMETAVNIGYACSLLRKDMKQIVITLDSSDIIYLEKQGDKQALAKASLESIKEQIGEGISQINSAKESSNANKGSSSGFGLIIDGKSLDYSLNKNLERSFFELAINCASVICCRSSPKQKARVTRLVKLRTGKTTLSIGDGANDVGMLQEADIGVGISGAEGMQAVMASDFAIAQFRFLERLLLVHGHWCYRRISMMICYFFYKNIAFGFTLFWFEAYASFSGQAAYNDWYMSFYNVFFTSLPVIALGVFDQDVSAKLCLKYPFLYLEGVEDTLFSWPRILGWMLNGVLSSLVIFFLTTNSVLNQAFRRDGKVVDFEILGVTMYTCVVWTVNCQMALSINYFTWIQHFFIWGSIAFWYVFVLVYGYLSPAISTTSYMVFVEACAPSGLYWLVTLLVVVCVLLPYFSYRSFQSRFLPMYHDIIQRKQVEGIEIGLSDDDLPKQVQGKLIHLRERLKQREL 1196
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu8g01108 1196 Pfam Cation transport ATPase (P-type) 528 632 - -
Vimu8g01108 1196 Coils Coil 117 137 - -
Vimu8g01108 1196 Pfam Phospholipid-translocating P-type ATPase C-terminal 903 1153 IPR032630 -
Vimu8g01108 1196 SFLD p-type atpase 407 926 IPR044492 -
Vimu8g01108 1196 FunFam Phospholipid-transporting ATPase 546 704 - -
Vimu8g01108 1196 NCBIfam phospholipid-translocating P-type ATPase 56 1161 IPR006539 GO:0000287|GO:0005524|GO:0015914|GO:0016020|GO:0140326
Vimu8g01108 1196 NCBIfam HAD-IC family P-type ATPase 843 958 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vimu8g01108 1196 Gene3D - 551 702 IPR023299 GO:0000166
Vimu8g01108 1196 SUPERFAMILY Calcium ATPase, transmembrane domain M 50 1152 IPR023298 -
Vimu8g01108 1196 Pfam Phospholipid-translocating ATPase N-terminal 41 104 IPR032631 -
Vimu8g01108 1196 CDD P-type_ATPase_APLT_Dnf-like 58 1035 - -
Vimu8g01108 1196 SUPERFAMILY Calcium ATPase, transduction domain A 144 285 IPR008250 -
Vimu8g01108 1196 FunFam Phospholipid-transporting ATPase 703 915 - -
Vimu8g01108 1196 Gene3D - 112 288 - -
Vimu8g01108 1196 PRINTS P-type cation-transporting ATPase superfamily signature 875 894 - -
Vimu8g01108 1196 PRINTS P-type cation-transporting ATPase superfamily signature 425 439 - -
Vimu8g01108 1196 SUPERFAMILY HAD-like 420 930 IPR036412 -
Vimu8g01108 1196 ProSitePatterns E1-E2 ATPases phosphorylation site. 427 433 IPR018303 -
Vimu8g01108 1196 Gene3D - 703 915 IPR023214 -
Vimu8g01108 1196 Pfam E1-E2 ATPase 137 331 - -
Vimu8g01108 1196 SFLD C1.7: P-type atpase like 407 926 - -
Vimu8g01108 1196 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 432 669 IPR023299 GO:0000166
Vimu8g01108 1196 PANTHER PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE 38 1163 - -
Vimu8g01108 1196 FunFam Phospholipid-transporting ATPase 117 287 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu8g01108 Vimu-Chr8 18068143 18076906 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu8g01108 1 1166 Primary Pumps ATPases AT1G68710 63.364 0.0 1593
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu8g01108 K01530 - gmx:100817020 2213.34