Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu8g01099 ATGGAAAGAGATTTGATACTTCTTGGTGCTACTGCAGTTGAGGATAGACTGCAAAAGGGGGTTCCCGAGTGTATTGAAAAGCTTGCACGGGCAAAAATCAAGTTATGGGTATTGACTGGAGACAAGATGGAAACTGCTGTCAACATAGGGTATGCTTGCAGTTTACTTAGAAAAGACATGAAACAGATAGTGATCACTCTTGATTCCTCAGATATCCTATACTTGGAAAAACAAGGGGACAAGCAGGCTTTAGCAAAGGCTTCTCTTGAAAGCATTAAGAAGCATATTGGAGAAGGAATCTCACAAATAAACTCTGCAAAAGAGAGTTCTAATGCAAATAAAGGAAGTTCTTCTGGGTTTGGCTTGATAATCGATGGGAAGTCCTTGGATTATTCTCTTAACAAGAATTTGGAAAGGTCTTTCTTTGAGCTTGCCATTAATTGTGCTTCTGTCATCTGTTGCCGATCTTCACCTAAACAGAAGGCTCGTGTTACAAGGTTGGTAAAATTGGGAACGGGGAAGACAATATTATCAATCGGTGACGGGGCAAATGATGTCGGCATGCTTCAGGAGGCTGATATTGGAGTTGGTATTAGTGGTGCTGAAGGGATGCAGGCTGTAATGGCAAGTGATTTTGCAATAGCTCAATTCCGGTTTCTAGAGCGTCTTTTGTTGTACATGGTCATTGGTGTTATCCGCATATGCTATTTTTTCTATAAAAACATTGCATTTGGATTTACCCTTTTTTGGTTTGAGGCGTATGCTTCTTTCTCTGGTCAAGCTGCTTACAATGATTGGTACATGTCATTTTACAATGTCTTCTTCACTTCACTTCCAGTGATCGCTCTAGGTGTTTTTGATCAAGATGTTTCTGCCAAACTTTGCCTAAAAGTCCAAGGAAAACTAATACACCTCAGAGAGAGATTGAAGCAAAGGGAGCTGTGA 945 0.4053 MERDLILLGATAVEDRLQKGVPECIEKLARAKIKLWVLTGDKMETAVNIGYACSLLRKDMKQIVITLDSSDILYLEKQGDKQALAKASLESIKKHIGEGISQINSAKESSNANKGSSSGFGLIIDGKSLDYSLNKNLERSFFELAINCASVICCRSSPKQKARVTRLVKLGTGKTILSIGDGANDVGMLQEADIGVGISGAEGMQAVMASDFAIAQFRFLERLLLYMVIGVIRICYFFYKNIAFGFTLFWFEAYASFSGQAAYNDWYMSFYNVFFTSLPVIALGVFDQDVSAKLCLKVQGKLIHLRERLKQREL 314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu8g01099 314 Gene3D - 4 219 IPR023214 -
Vimu8g01099 314 NCBIfam HAD-IC family P-type ATPase 147 257 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vimu8g01099 314 PANTHER PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE 1 298 - -
Vimu8g01099 314 Pfam Phospholipid-translocating P-type ATPase C-terminal 207 298 IPR032630 -
Vimu8g01099 314 SUPERFAMILY Calcium ATPase, transmembrane domain M 234 296 IPR023298 -
Vimu8g01099 314 FunFam Phospholipid-transporting ATPase 7 219 - -
Vimu8g01099 314 SUPERFAMILY HAD-like 2 223 IPR036412 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu8g01099 Vimu-Chr8 18022367 18025229 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu8g01099 1 297 Primary Pumps ATPases AT3G27870 75.908 1.54e-158 466
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu8g01099 K01530 - gmx:100817020 537.339