Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu8g01089 ATGGCGGATGAGGAGTCAGTAAGAGGAAGGCGAAGGCCCAGGGGCCTGGAGTCCCCCGCTCGCAGCAAAGCGTTGGAGCGTCTCAAGGCCCGCCTCCACGGTGATCTTCGATCCGATGGCACTGGCCCCCAAATCAGGTTAGAAAACCCTGTCTACGACACTGTCCCTGAGGACGAGTTCAATGCCCTCGTTGCCAAGCGTCATGAACAGTCCGGGTTCACTCTCTCCTCTGATAAATCCGAAGGCGACTTGGAGAGGCTGCAGAAGAAGGTCAAGAAGAAGGATCATCAGCTGGAACGACCCTCTTCATCGCTCTCAGTGGCTGCGGCCATGATGGGAGGGCAGAAGTTGTTGTCCATGTTCACTAGCTCCGTTTTCAAGAGCAGAGACGACAAAGTCTGTGAGAGCATCGTCGAAGATGTTATTGCAGAGTTCACTGCAGACGAGACCGATAGACTGAAGCGTAGAAGGGTGCAAGGGAATTCCTCTTCCACTTCTGAGGCAAACAATATTTTCCATGTTAATATGTTTAGGGATAAACCTTCTGTTGGTATGATGCAAAATTCTTCTTCATTGCCGGAACATGGTAACCCTGAGTCTGTTAAGGTATTTGCTGAGAGTGATGGTTTTTACTCGGGGTTTGAGTCAAAGAGCACAGTGGTTAGTGAAGTCCAAGATTTCGGGCGTGGTAGTTCTGAGAATGGGCAGACACCGATGGTGGTAGCTGATGATTCTCAAGTTAATGAATGTATGGTTGAGGTGAAAGAGGGGAATAGTTTTCAAATTGAAGTGAAAGCGGATGCAAAGAAGGAGGTGTTCACTTTGAAGGCAAAGGTTAAAGAAGCTGACGACACTGCATTGTCTGCTACTGCTGGTTGGAAGGAAGCAATATCCTTCGAATCAGCACCGCGTATTGCTTCCTTCCAATACTCAGAGTTTGATCTGGAGGAAGATGGATCACTGCGTTTCTACATATTAGATGCGTATGAGGAGTTTCATGGGGAAAACAGGGGCACAATTTATCTCTTTGGGAAGGTTAAGACTGGGGATTTGTATCAGAGTTGTTGTGTTATTGTCAAGAGCATGCAGAGGTGTGTCTATGCAGTTCCTAGCCGACCCTTGCTTCGCACTGAAGAGATGATGAGTCTCGAGAGAGATGTCCAGGAGTCTCGAATTTCTTCAGAGGATTTCTTTAAAAAGTTGCAAGATGCAGTAGCTGATGTTAAGAATGAGATAACAAAACATCTGGTGAATTTGGATGTGTCGAACTTTAGCATGGCACCTGTTAAGAGGAAATATGCATTTGATCGATTTGAAGTTCCTACTGGGGAAAATTATGTGGTGAAAATAAATTATTCATTCAAGGGTCCTGTACTTCCAGCAGATCTCAAAGGAGAAAGTTTCTGTGCTCTCTTAGGAACTAGTTGCAGTGCCCTTGAGCTTTTTCTGATTAAACGGAAGATAAAGGGGCCTTCATGGCTACAGGTTTCAAAGTTTGCTACAAGCTCATCTTCCCCAAGGGTTAGCTGGTGCAAATTTGAAGTAACTGTTGACTCTCCTAAGAACATAAAGACTGCTCCTTCAAAAATCACTTCTAATATTCCTCCCGTGGTTGTTGCAGCAATAAACTTGAAAACCACCATAAATGAAAAGCAGAACATAAATGAGATTGTATCAGCATCCGTTGTCTGTTGTAACATGGTTAAGATTGATGCCCCTATGATGGCTTCAGAGTGGACGAAACCCGGAAGGCTGACCCATTTTACTGTTGTTCGTCAACTTGATGGGGGTATATTTCCAATGGGATTCGAGAAGGAGGTTACGGACAGAAACTTAAAAGCTGGTTCAAAGATTCTGTGTGCTGAAAGCAGTGAAAGAGCTTTATTGAACCGCTTGATGTTAGAATTGCACAAGTTGGATTGCGATGTTCTGGTTGGACATAATATATCTGGATTTGACCTGGATGTTCTTCTCCACAGATTCAAGGCCTGCAAAGTGGCAAGCAGCATGTGGTCTAAACTAGGCCGCCTCAACCGATCGACTATGCCTAAACTTGGAAGAAGAAATAAGGTTTTTGGTTCTGGAGGTGATCCTGGTATCATGTCATGCATTGCTGGCAGGCTTCTTTGTGATACATACTTGTGTTCCCGTGACCTATTAAAGGAGGTTAGTTACTCTTTAAGTCACCTTGCAAAATCACACCTGAACAAGTTTCGGAAGGAAGTTGCTCCACATGAAGTTCCAAAAATGTTCCAGTCAGCAAAATCGCTAATGGAGCTTATTGAATACGGTGAAACAGATGCACGGTTGTCTATGGAACTAATGTTTTATTTAAATATTCTTCCACTCACCCGTCAGCTGACTAAGATAAGTGGTAATCTGTGGGGGAAAACTCTTCAGGGTGCTCGAGCACAGAGGGTTGAATATCTTTTTCTGCATACTTTTCATGCAGTGAAATATATGGTGCCAGACAAGTTCTCAAACTATTCTAAAGAAACGAAATTGACGAAACGTAGACTAACCCACGATGCTGAAGATAGCAACTACGATGTAGATGTTGACGATGTAAACTATGACAATGATGCTTCTGAAGCTGATAATAAGAAAAGCAAAAAGGGTCCTTCTTATGCTGGGGGACTGGTTTTGGAGCCAAAGAAGGGTCTATATGACAAATATATACTGCTGCTGGATTTCAACAGTCTTTATCCTTCTATTATTCAGGAATACAATATTTGCTTTACAACTGTTGAAAGATCTTTGGATGGATCTTTTCCACGTCTACCATCTAGTAAAACAACTGGAGTCTTGCCAAAGGTGCTGAAAAATCTGGTAGATAGGAGGAAGACGGTAAAGTCGTTGATTAAGAATGAAAAAGCTGATCCTATAAGGGTTCAGCAACTGGATATTCAGCAGCAAGCACTTAAGCTTACTGCTAACAGTATGTATGGGTGCCTGGGATTTTCCAATTCAAGATTTTATGCTAAGCCGTTGGCTGAGCTTATTACTTTACAAGGAAGGGAGATACTGCAGAGTACTGTTGATTTAGTTCAGAATGCCTTGAATTTAGAGGTTATCTCTAGTACTCTTCATCTTGAAGTGATCTATGGCGACACTGATTCAATAATGATTTACAGTGGGCTGGATGATATTAAGGAAGTACAAGAAGAAATGAGGAACGGACAAGTACCATTAGAGAAATATGTCATTACGAAGACATTGACTAAACCCCCTGAAGCTTATCATGATGCCAAGAATCAGCCACATGTGGCACAAAGATTGGAGCAACAAGGTTACTCTTCTGGCTGTTCTGTTGGTGATACAATCCCGTATATAATTTGTTATGAACAGGGTGGCAGTTCAGGCAGTGCCGGTGGCATTGCTCAACGTGCTAGACATCCTGAAGAACTTAAACAGGAACAAGGGACATGGCTGATTGACATTGATTACTATTTATCACAACAGATCCATCCCGTAGTATCACGCCTTTGTGCATCAATTCAGGGAACAAGCCCAGAAAGACTGGCTGATTGCTTAGGGCTTGACTCCTCAAAGTTTCATCATAAATCAAGTGAAGCTTTTAATGATGATTCTAGCAGTTTACTCTTGTCTGCTGCTAATGATGAGGAGAGGTATCGGGGATGTGAGCCATTGGTCTTGCCATGCCCCAGCTGCTCTGGTACATTTGACTGCACACCCGTCTCTAAATATATTTGCTGCTTGTTGGGAAGTGGAATGACAACCAGCGTATCCACCGAGGAATCTGACTTCAATTTCTGGCGTAAGCTGTGTTGTCCTAAATGCCCCGAAGATATCAAAATTTCTCCGGCGATGATAGCGAATCAGGTCAAAAGGCAAGCAGAGATGTTTATTTTGATGTTCTTTAAAGGTTTACGAACGTGTGATGATGAAACGTGTAAGCATACAACGCGACTTATCAGCCATCGGTTTGTTAGTGATTACGAGAGAGGAACTGTTTGTCCAAATTATCCTCGCTGCAATGGTCGTCTGCTTAGAAAGTACACTCAAGCAGACTTGTACAAGCAGCTCTCGTATTTTTGCCACGTGTTTGACACTGTTTCTTGTATAGAAAAGATGGAGGCCAAATCTAGAATAACTATAGCGAAAGAGGTGATAAAAATTAAGCAGATGATTGATCCGGCAGCTTCAACAGCGCAGAAGATCAGGGACCAATGTCCCTTTGGTTGGGTGAGACTGGAGGATCTGGTCGTATCAGTTTAA 4239 0.4324 MADEESVRGRRRPRGLESPARSKALERLKARLHGDLRSDGTGPQIRLENPVYDTVPEDEFNALVAKRHEQSGFTLSSDKSEGDLERLQKKVKKKDHQLERPSSSLSVAAAMMGGQKLLSMFTSSVFKSRDDKVCESIVEDVIAEFTADETDRLKRRRVQGNSSSTSEANNIFHVNMFRDKPSVGMMQNSSSLPEHGNPESVKVFAESDGFYSGFESKSTVVSEVQDFGRGSSENGQTPMVVADDSQVNECMVEVKEGNSFQIEVKADAKKEVFTLKAKVKEADDTALSATAGWKEAISFESAPRIASFQYSEFDLEEDGSLRFYILDAYEEFHGENRGTIYLFGKVKTGDLYQSCCVIVKSMQRCVYAVPSRPLLRTEEMMSLERDVQESRISSEDFFKKLQDAVADVKNEITKHLVNLDVSNFSMAPVKRKYAFDRFEVPTGENYVVKINYSFKGPVLPADLKGESFCALLGTSCSALELFLIKRKIKGPSWLQVSKFATSSSSPRVSWCKFEVTVDSPKNIKTAPSKITSNIPPVVVAAINLKTTINEKQNINEIVSASVVCCNMVKIDAPMMASEWTKPGRLTHFTVVRQLDGGIFPMGFEKEVTDRNLKAGSKILCAESSERALLNRLMLELHKLDCDVLVGHNISGFDLDVLLHRFKACKVASSMWSKLGRLNRSTMPKLGRRNKVFGSGGDPGIMSCIAGRLLCDTYLCSRDLLKEVSYSLSHLAKSHLNKFRKEVAPHEVPKMFQSAKSLMELIEYGETDARLSMELMFYLNILPLTRQLTKISGNLWGKTLQGARAQRVEYLFLHTFHAVKYMVPDKFSNYSKETKLTKRRLTHDAEDSNYDVDVDDVNYDNDASEADNKKSKKGPSYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTTVERSLDGSFPRLPSSKTTGVLPKVLKNLVDRRKTVKSLIKNEKADPIRVQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITLQGREILQSTVDLVQNALNLEVISSTLHLEVIYGDTDSIMIYSGLDDIKEVQEEMRNGQVPLEKYVITKTLTKPPEAYHDAKNQPHVAQRLEQQGYSSGCSVGDTIPYIICYEQGGSSGSAGGIAQRARHPEELKQEQGTWLIDIDYYLSQQIHPVVSRLCASIQGTSPERLADCLGLDSSKFHHKSSEAFNDDSSSLLLSAANDEERYRGCEPLVLPCPSCSGTFDCTPVSKYICCLLGSGMTTSVSTEESDFNFWRKLCCPKCPEDIKISPAMIANQVKRQAEMFILMFFKGLRTCDDETCKHTTRLISHRFVSDYERGTVCPNYPRCNGRLLRKYTQADLYKQLSYFCHVFDTVSCIEKMEAKSRITIAKEVIKIKQMIDPAASTAQKIRDQCPFGWVRLEDLVVSV 1412
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu8g01089 1412 Coils Coil 77 97 - -
Vimu8g01089 1412 Pfam DNA Polymerase alpha zinc finger 1204 1408 IPR015088 GO:0003887|GO:0006260
Vimu8g01089 1412 Gene3D Palm domain of DNA polymerase 873 1008 IPR023211 -
Vimu8g01089 1412 MobiDBLite consensus disorder prediction 1 22 - -
Vimu8g01089 1412 FunFam DNA polymerase 1020 1195 - -
Vimu8g01089 1412 Pfam DNA polymerase family B 794 1053 IPR006134 GO:0000166|GO:0003677
Vimu8g01089 1412 SUPERFAMILY Ribonuclease H-like 423 816 IPR012337 -
Vimu8g01089 1412 MobiDBLite consensus disorder prediction 851 876 - -
Vimu8g01089 1412 SMART polmehr3 535 1047 IPR006172 GO:0000166|GO:0003676|GO:0003887
Vimu8g01089 1412 FunFam DNA polymerase 1204 1398 - -
Vimu8g01089 1412 PRINTS DNA-directed DNA-polymerase family B signature 893 906 IPR006172 GO:0000166|GO:0003676|GO:0003887
Vimu8g01089 1412 PRINTS DNA-directed DNA-polymerase family B signature 1033 1041 IPR006172 GO:0000166|GO:0003676|GO:0003887
Vimu8g01089 1412 PRINTS DNA-directed DNA-polymerase family B signature 971 983 IPR006172 GO:0000166|GO:0003676|GO:0003887
Vimu8g01089 1412 NCBIfam DNA polymerase (pol2) 66 1053 - -
Vimu8g01089 1412 Gene3D - 363 489 - -
Vimu8g01089 1412 PANTHER DNA POLYMERASE ALPHA CATALYTIC SUBUNIT 1050 1411 - -
Vimu8g01089 1412 ProSitePatterns DNA polymerase family B signature. 1035 1043 IPR017964 GO:0000166|GO:0003676
Vimu8g01089 1412 Gene3D - 322 522 - -
Vimu8g01089 1412 Gene3D - 1021 1196 IPR042087 -
Vimu8g01089 1412 CDD DNA_polB_alpha_exo 535 786 - -
Vimu8g01089 1412 FunFam DNA polymerase 535 849 - -
Vimu8g01089 1412 Gene3D - 535 851 IPR036397 GO:0003676
Vimu8g01089 1412 Pfam DNA polymerase family B, exonuclease domain 353 728 IPR006133 -
Vimu8g01089 1412 Gene3D DNA Polymerase alpha, zinc finger 1204 1397 IPR038256 -
Vimu8g01089 1412 SUPERFAMILY DNA/RNA polymerases 867 1181 IPR043502 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu8g01089 Vimu-Chr8 17961901 17972757 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu8g01089 964 1410 Core DNA Replication Machinery Family AT5G67100 50.218 3.13e-139 463
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu8g01089 K02320 - gmx:100798779 1584.31