Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu8g01085 ATGTTGGGTGATCCAAAAGAGGCTAGAGATGGCATTACAGAGGTTCATTTTCTGCCATTTAACCCAGTGGACAAGCGCACAGCCATAACATACATAGACAGTGAAGGTAAGTGGTACCGAGTAAGCAAAGGTGCACCGGAGCAGATTATCGAGCTCTGCAATCTTCGGGAAGACGTGAAGAAGAAGGCTTTATCCATCATTGGTAAATTTGCTGATCGCGGTCTTCGTTCGCTTGCCGTGGCGAAACAAGAGGTGCCAGAAAAGACAAAGGAGAGTGCTGGAGGACCATGGCAGTTCGTGGGTCTGTTGCCACTCTTTGACCCACCAAGGCATGACAGTGCTGAGACTATAAGGCGCGCTCTCCATCTAGGAGTTAACGTTAAGATGATTACAGGTGATCAGCTAGCCATCGGGAAGGAAACTGGTCGCAGACTTGGCATGGGAAGCAACATGTATCCTTCTTCATCCCTCCTCGGTCAGCATAAGGATGAGTCCATTGCTGCACTTCCCATTGATGAACTTATTGAGAAAGCTGATGGCTTTGCCGGTGTCTTCCATGGTACCATCATGACTATTTCCAAAGACAGGGTGAAGCCATCTCCAGTGCCAGATTCCTGGAAGTTGAGAGAGATTTTCATTACCGGCGTTGTTCTCGGTGCCTACCTAGCTATCATGACTGTTATCTTCTTCTGGGCTGCTTATGCATCTAACTTTTTCTCAGACAAATTCGGAGTGAGATCCATCAGGGAAAGCCACGGCGAGCTCACGGCAGCTGTTTATCTTCAAGTGAGCATTGTAAGTCAAGCACTGATTTTTGTGACACGCTCAAGGAGCTGGTCTTACGTTGAACGCCCTGGTCTACTTCTTGTCGTTGCTTTTCTTATAGCACAGCTCATTGCCACACTCATAGCTGTGTATGCAAACTGGGGATTTGCAAAGATTAATGGCATTGGATGGGGTTGGGCTGGTGTGATCTGGCTCTACAGCATAATTTTCTACATTCCCATGGATATTCTGAAGTTCATCATCCGATATGGATTAACTGGAAAGGCTTGGAACAATATCACTGAGAATAGGGTTGCTTTCAACTCAAAGAACGATTATGGAAAGGGAGAAAGAGAAGCACAGTGGGCTGTAGCTCAACGAACATTGCATGGGTTGAATCCACCTCAAACTGTTCATGAGATTTTGAATGAGAAAAACGACTACAGGGAGCTGTCTGAACTTGCAGAACAGGCCAAGAAACGTGCAGAAGTTTCAAGGCTAAGGGAGGTTCATACTCTAAAGGGTCATGTTGAGTCTGTCGTGAAGCTCAAAGGACTTGACATTGATACAATCCAGCAGAACTACACGCTTTGA 1359 0.4636 MLGDPKEARDGITEVHFLPFNPVDKRTAITYIDSEGKWYRVSKGAPEQIIELCNLREDVKKKALSIIGKFADRGLRSLAVAKQEVPEKTKESAGGPWQFVGLLPLFDPPRHDSAETIRRALHLGVNVKMITGDQLAIGKETGRRLGMGSNMYPSSSLLGQHKDESIAALPIDELIEKADGFAGVFHGTIMTISKDRVKPSPVPDSWKLREIFITGVVLGAYLAIMTVIFFWAAYASNFFSDKFGVRSIRESHGELTAAVYLQVSIVSQALIFVTRSRSWSYVERPGLLLVVAFLIAQLIATLIAVYANWGFAKINGIGWGWAGVIWLYSIIFYIPMDILKFIIRYGLTGKAWNNITENRVAFNSKNDYGKGEREAQWAVAQRTLHGLNPPQTVHEILNEKNDYRELSELAEQAKKRAEVSRLREVHTLKGHVESVVKLKGLDIDTIQQNYTL 452
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu8g01085 452 Pfam Cation transport ATPase (P-type) 3 54 - -
Vimu8g01085 452 Gene3D - 401 452 - -
Vimu8g01085 452 Gene3D - 2 106 IPR023299 GO:0000166
Vimu8g01085 452 PANTHER CALCIUM-TRANSPORTING ATPASE 1 185 - -
Vimu8g01085 452 SUPERFAMILY Calcium ATPase, transmembrane domain M 190 345 IPR023298 -
Vimu8g01085 452 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 3 112 IPR023299 GO:0000166
Vimu8g01085 452 Coils Coil 396 423 - -
Vimu8g01085 452 Gene3D - 107 184 IPR023214 -
Vimu8g01085 452 FunFam Plasma membrane ATPase 99 197 - -
Vimu8g01085 452 PRINTS H+-transporting ATPase (proton pump) signature 63 81 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vimu8g01085 452 PRINTS H+-transporting ATPase (proton pump) signature 178 194 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vimu8g01085 452 FunFam Membrane H(+)-ATPase1 46 106 - -
Vimu8g01085 452 Gene3D - 185 346 - -
Vimu8g01085 452 SUPERFAMILY HAD-like 98 156 IPR036412 -
Vimu8g01085 452 PRINTS P-type cation-transporting ATPase superfamily signature 123 133 - -
Vimu8g01085 452 PRINTS P-type cation-transporting ATPase superfamily signature 101 112 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu8g01085 Vimu-Chr8 17940092 17941804 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu8g01085 187 452 Primary Pumps ATPases AT2G07560 73.684 6.80e-140 422
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu8g01085 K01535 - gmx:100782329 478.404