Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu8g01083 ATGGGAGGTCTCGAAGATATCAAGAACGAGGCAGTGGATCTGGAGCGGATTCCTGTGGATGAAGTGTTCCGCGAACTGAATTGTACGAAGGAAGGTCTGACGACTGAGGAAGGCGACAAGAGGTTGCAGGTTTTTGGACCAAACAAGTTGGAAGAAAAGGAAGAAAGCAAGCTCCTTAAATTCTTGGGTTTTATGTGGAACCCTTTGTCATGGGTGATGGAAGCCGCAGCCATCATGGCCATTGCATTGGCAAATGGAGGGGGTGAGCCCCCAGACTGGCAAGACTTTGTTGGAATCGTGGTGTTGCTCTTTATCAACTCAACCATCAGTTTCATTGAAGAAAACAACGCCGGCAATGCTGCGGCAGCACTCATGGCAGGC 381 0.4961 MGGLEDIKNEAVDLERIPVDEVFRELNCTKEGLTTEEGDKRLQVFGPNKLEEKEESKLLKFLGFMWNPLSWVMEAAAIMAIALANGGGEPPDWQDFVGIVVLLFINSTISFIEENNAGNAAAALMAG 127
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu8g01083 127 PANTHER CALCIUM-TRANSPORTING ATPASE 15 126 - -
Vimu8g01083 127 SMART Cation_ATPase_N_a_2 13 85 IPR004014 -
Vimu8g01083 127 Pfam Cation transporter/ATPase, N-terminus 17 79 IPR004014 -
Vimu8g01083 127 Gene3D - 64 127 - -
Vimu8g01083 127 SUPERFAMILY Calcium ATPase, transmembrane domain M 13 125 IPR023298 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu8g01083 Vimu-Chr8 17938914 17939334 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu8g01083 5 114 Primary Pumps ATPases AT2G07560 78.182 5.25e-56 185
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu8g01083 K01535 - gmx:100796240 196.052