Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu8g01079 ATGGCAGAAACATCCACCGCCGCCACCACATCCACCACGGCGGACCCTCCGCCGCCAGTTACCAAAAGATGGGCTGACGAAGCGGACGAAGAAACCGAAGCCTCCTCCACCGCCACCGCCACTGAAGCCTCTTCCGTCAACCTCGATTCATTAAAAATCGAAGACAACGATGAGAACCCTCCCAAACTCTTGGATGACCCCGACGATTCTAGCATTCAAAAGGTTACCTCTGGAGAAACGCCGTACACGTCGGCTGCGAAGTTCGAGGACTTAAACCTCTCGCCGGAGCTTCTGAAAGGGCTCTACGTGGAGATGAAGTTCCAGAAGCCGAGCAAGATCCAGGCGATAAGTTTGCCGATGATCCTCAACCCGCCGCACCGTGACCTCATCGCGCAGGCGCACAACGGGTCTGGGAAGACCACGTGCTTCGTGCTTGGGATGCTCAGCCGCGTCGATCCCAAGGTGCAGGCGCCGCAGGCTCTCTGTGTCTGCCCCACTCGGGAGTTGGCTAATCAGAACATCGAGGTTCTCCGCAAGATGGGAAAGTACACCGGGATTGCGTCGGAGTGCGCTGTGCCTACGGATAGCAATGCGCTCTCGATCGCGAAAAGGGCGCCGATTATGGCGCAGGTGGTGATCGGAACCCCTGGCACCATCAAGAAGTGGATGAGCTTCAAGAAACTTGGGGCCGCCAGGTTGAAGATTCTTGTTTTTGACGAGGCAGATCAAATGCTTGCGGAGGATGGATTTAAAGATGATTCCCTGAGGATAATGAAAGAAATAGAAAAAGTCAATTCTAATTGTCAGGTTCTTCTGTTTTCTGCTACATTTAATGACACCGTCAAGAATTTCGTTTCAAGGACAGTCAAAGAGGATCATAATAAACTTTTTGTAAAGAAAGAAGAACTATCTTTAGATGCAGTGAAGCAATATAAAGTCTACTGTTCTGATGAACTTGCGAAGATTGAAGTGATAAAAGATTACATATTTGAAATAGGAGAGAATGTGGGGCAAACCATCATATTTGTGCGTACAAGAAATAGTGCACAAATGTTGCATAAATCACTTGTTGACATGGGCTACGAGGTTACATCTATACAAGGTGCTCTTGGTCATGACGAGAGAGAGAAAATTGTTAAGGAGTTCAGAGATGGTTTGACTCAAGTTCTTATTTCAACTGATCTTCTTGCTCGTGGCTTTGATCAGCAACAGGTTAATTTGGTCATCAATTATGATCTTCCAATGAAACACACTGCCAGCTATACCCGTGAACCTGAGCCTGATTGTGAAGTGTATTTGCATAGGGTTGGCAGAGCTGGGCGTTTTGGGCGCAAAGGGGCTGTATTTAACCTTATATGTGATCAAAAGGATGAAAGGCTCATGTCGAAGATTGAGAATCACTTCGGCACTCGTGTAGCTGAGGTGCGAGCACAAAGTGTTGAAGACTATAAAGGTGCTCTCAAGGAAGCTGGTTTACTGCAATGA 1485 0.4795 MAETSTAATTSTTADPPPPVTKRWADEADEETEASSTATATEASSVNLDSLKIEDNDENPPKLLDDPDDSSIQKVTSGETPYTSAAKFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILNPPHRDLIAQAHNGSGKTTCFVLGMLSRVDPKVQAPQALCVCPTRELANQNIEVLRKMGKYTGIASECAVPTDSNALSIAKRAPIMAQVVIGTPGTIKKWMSFKKLGAARLKILVFDEADQMLAEDGFKDDSLRIMKEIEKVNSNCQVLLFSATFNDTVKNFVSRTVKEDHNKLFVKKEELSLDAVKQYKVYCSDELAKIEVIKDYIFEIGENVGQTIIFVRTRNSAQMLHKSLVDMGYEVTSIQGALGHDEREKIVKEFRDGLTQVLISTDLLARGFDQQQVNLVINYDLPMKHTASYTREPEPDCEVYLHRVGRAGRFGRKGAVFNLICDQKDERLMSKIENHFGTRVAEVRAQSVEDYKGALKEAGLLQ 494
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu8g01079 494 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 324 484 IPR001650 -
Vimu8g01079 494 SMART helicmild6 350 443 IPR001650 -
Vimu8g01079 494 MobiDBLite consensus disorder prediction 1 17 - -
Vimu8g01079 494 Pfam Helicase conserved C-terminal domain 321 443 IPR001650 -
Vimu8g01079 494 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 120 295 IPR014001 -
Vimu8g01079 494 MobiDBLite consensus disorder prediction 34 50 - -
Vimu8g01079 494 MobiDBLite consensus disorder prediction 1 76 - -
Vimu8g01079 494 Gene3D - 305 487 IPR027417 -
Vimu8g01079 494 Gene3D - 64 302 IPR027417 -
Vimu8g01079 494 Pfam DEAD/DEAH box helicase 112 283 IPR011545 GO:0003676|GO:0005524
Vimu8g01079 494 CDD SF2_C_DEAD 308 452 - -
Vimu8g01079 494 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 48 463 - -
Vimu8g01079 494 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 86 115 IPR014014 GO:0003724
Vimu8g01079 494 MobiDBLite consensus disorder prediction 51 69 - -
Vimu8g01079 494 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 158 461 IPR027417 -
Vimu8g01079 494 CDD DEADc_DDX19_DDX25 93 296 - -
Vimu8g01079 494 SMART ultradead3 106 311 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu8g01079 Vimu-Chr8 17900939 17904509 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu8g01079 79 475 Eukaryotic Initiation Factors Gene Family AT1G72730 36.275 2.47e-70 228
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu8g01079 K18655 - gmx:100784739 759.985