LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vimu8g01052	ATGAATGATGATTACAAGAAGTTAGACAATTGCCTTTGTGACAAAGTGACCAAACAACTTGTCCGAAAGGGATGGGAACATGTAAAGGTGCAACAACCAGACGCAAAGAAAGAGATCTTTGGTTTCAATAAATTAGAAGAAGTTGAAGGTTTTGTTAATCGGAGGGAACCAAAGTGGGGCAGAAACACACGTCGTCTTCAGGCAAAATCCATTAAGGGTGAGAGAGTGTTATATTTAGGACCTCAACATCACCACAGGTATAACAGCAGCAGCACCTGCAGTGGCAGCATAAGCATACAGCAAGACCCACCAAGGAAATTTTGTTCAAGACCAGAACTTGGTCTGGCTCGAGGGTCAAAGTCCATAGTGGGGTGTGGTGAATTTTATTTTGGAGTGGGGGAGAAAGAGAAGAGTGAGAGTGGGGGGTATGTGAGAGCGGATCAGATAGATCTGAAGAGCTTGGATGAGCAGCTTCAGAGGCATCTTAGTAGAGCATGGACTATGGAGAAGAACAAGGAGAAGGAGGAAGAGGAGGTTGAAGGAAGGTCCACAAGAAGCAGACAAGAGTGGGAGATTGACCCTTCTAAGCTTGTCATCAAGGCTGTCATTGCCCGAGGCACTTTTGGCACAGTTCACCGTGGGATTTATGACGGACAAGATGTCGCAGGTATTAAGCTCCTTGACTGGGGAGAAGAGGGACATCGATCAGATGCTGAAATAGCTTCTTTGAGAGCGGCGTTTACTCAAGAAGTTGCTGTTTGGCACAAGCTTGATCATCCTAATGTAACCAAGTCAAATGATGATGAACAAAATGAAAGAGGGAAGATAAATGATGAAGAAGATCTTGAGTTTAATGTGTTACTTGAGGCTAATATTGAGCTGGAATACCTGCACCAAGGGGAAAAACCTGTGCAAGTGTACAGGGCAGAAATTTGGTCTGGTCTTCATTTTATTGGGGCAACAATGGGAACATCAGAGCTACAGTTACAAACAGAAAACGGTCATATAGGCATGCCAAGTAATGTTTGTTGTGTTGTTGTTGAATATTGTCCTGGAGGCGCTCTGAAGACTTATCTTATTAAAAACCGAAGAAGGAAGCTGGCTTTTAAAGTGGTTGTTCAACTGGCTCTTGACCTTGCAAGAGGGTTGAGCTATCTCCACACAAAGAAGATTGTCCACAGGGATGTTAAAACAGAAAATATGCTTCTGGACAAGACACGAACCTTGAAAATAGCTGATTTTGGAGTGGCTCGGATTGAGGCTTCCAATCCTCATGACATGACAGGTGAAACTGGAACCCTTGGTTACATGGCTCCTGAGGTTCTAAACGGTAATCCATACAATAGAAAGTGTGACGTGTACAGTTTTGGCATATGCTTATGGGAGATATACTGCTGTGACATGCCATATCCGGACCTTAGCTTCTCCGAAGTGACATCAGCTGTAGTACGGCAGAATCTGAGGCCGGAGATTCCACGATGTTGTCCTAGCTCTCTGGCAAATGTGATGAAAAGATGCTGGGATGCCAATCCTGACAAGAGGCCAGAAATGGATGAAGTGGTGTCCATGTTGGAAGCTATTGACACTTCAAAGGGTGGAGGTATGATCCCTCTTGATCAGCCTCAGGGTTGTTTATGTTTTCGCAGCTATCGAGGACCTTGA	1662	0.4452	MNDDYKKLDNCLCDKVTKQLVRKGWEHVKVQQPDAKKEIFGFNKLEEVEGFVNRREPKWGRNTRRLQAKSIKGERVLYLGPQHHHRYNSSSTCSGSISIQQDPPRKFCSRPELGLARGSKSIVGCGEFYFGVGEKEKSESGGYVRADQIDLKSLDEQLQRHLSRAWTMEKNKEKEEEEVEGRSTRSRQEWEIDPSKLVIKAVIARGTFGTVHRGIYDGQDVAGIKLLDWGEEGHRSDAEIASLRAAFTQEVAVWHKLDHPNVTKSNDDEQNERGKINDEEDLEFNVLLEANIELEYLHQGEKPVQVYRAEIWSGLHFIGATMGTSELQLQTENGHIGMPSNVCCVVVEYCPGGALKTYLIKNRRRKLAFKVVVQLALDLARGLSYLHTKKIVHRDVKTENMLLDKTRTLKIADFGVARIEASNPHDMTGETGTLGYMAPEVLNGNPYNRKCDVYSFGICLWEIYCCDMPYPDLSFSEVTSAVVRQNLRPEIPRCCPSSLANVMKRCWDANPDKRPEMDEVVSMLEAIDTSKGGGMIPLDQPQGCLCFRSYRGP	553

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vimu8g01052	553	ProSiteProfiles	Protein kinase domain profile.	197	527	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vimu8g01052	553	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	391	403	IPR008271	GO:0004672\|GO:0006468
	Vimu8g01052	553	SMART	serkin_6	197	527	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vimu8g01052	553	Gene3D	Transferase(Phosphotransferase) domain 1	330	531	-	-
	Vimu8g01052	553	PRINTS	Tyrosine kinase catalytic domain signature	495	517	IPR001245	GO:0004672\|GO:0006468
	Vimu8g01052	553	PRINTS	Tyrosine kinase catalytic domain signature	385	403	IPR001245	GO:0004672\|GO:0006468
	Vimu8g01052	553	PRINTS	Tyrosine kinase catalytic domain signature	451	473	IPR001245	GO:0004672\|GO:0006468
	Vimu8g01052	553	PRINTS	Tyrosine kinase catalytic domain signature	347	360	IPR001245	GO:0004672\|GO:0006468
	Vimu8g01052	553	Gene3D	Phosphorylase Kinase; domain 1	185	265	-	-
	Vimu8g01052	553	CDD	STKc_MAP3K-like	203	524	-	-
	Vimu8g01052	553	SUPERFAMILY	Protein kinase-like (PK-like)	179	524	IPR011009	-
	Vimu8g01052	553	Pfam	Protein tyrosine and serine/threonine kinase	341	524	IPR001245	GO:0004672\|GO:0006468
	Vimu8g01052	553	Coils	Coil	158	178	-	-
	Vimu8g01052	553	PANTHER	SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED	139	527	-	-
	Vimu8g01052	553	FunFam	Serine/threonine-protein kinase HT1	350	535	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vimu8g01052	Vimu-Chr8	17691672	17695991	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vimu8g01052	145	553	MAP Kinase Kinase Kinase	AT3G22750	60.533	0.0	512

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	TKL-Pl-4	Vimu8g01052		PK_Tyr_Ser-Thr	7.3e-54	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vimu8g01052	-		-	gmx:100796762	671.774