Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu8g01045 ATGGAAGCAGGGAGATCGATGATGAGCTTGGAGGAAGCCTCAAAGAGGCGACCTTTCTTCACCTCACCGGATGAACTGTATGACGAGGAGTATTATGAGAAACAGATGCCGGAGAAGAAGCATCGCCTCAGTTCTGAACAGGTCCATCTGTTGGAGAAGAGCTTTGAGGAAGAGAACAAACTGGAGCCTGAGAGGAAGACCCAGTTGGCCAAGAAGCTGGGATTGCAACCAAGGCAGGTAGCTGTTTGGTTTCAGAACCGCAGGGCTCGATGGAAGACCAAACAGCTCGAAAGGGATTTTGATGTTCTCAAGTCTTCATACGATACCCTTCTTTCATCCTACGATTCACTTATGAAGGATAATGAGAAACTGAAATCTGAGGTGGTATCCTTAAATGAGAAGCTTCAAGTTCAAGCTAAAGAGGTGCCTGAGGAACCATTGTATGACAAGAAAGTTGATCCACTTCCGGTAGAAGATATAGCTTCAATTTTCAGCACAAGGGTGGAGGACCACCAGAGCAGTGGGTCTGTTGGAAGTGCAGTGGTGGATGAGGGTAGTCCGCAGCTGGTGGTTGACAGTGTTGATTCACACTTTCCGGCTGAGAACCCTGGTGGCTGTGTGGGCCCAGTTGAAAGAGTTCAGTCAGAGGAGGAGGATGGAAGTGATGATGGGAGGAGTTACATGGATGTGTTTGTGGTATCTGAAACTGAGAACCAAAACCATGAGGAAGGAGAGGGATTGGAGGAAAATGTAAACGCCCGGGTGGCTTGGATTCCTAGGAGTTGGAGTGTCCTTAAGCCAAGTTTAATAAATAAAGTGTAG 822 0.4757 MEAGRSMMSLEEASKRRPFFTSPDELYDEEYYEKQMPEKKHRLSSEQVHLLEKSFEEENKLEPERKTQLAKKLGLQPRQVAVWFQNRRARWKTKQLERDFDVLKSSYDTLLSSYDSLMKDNEKLKSEVVSLNEKLQVQAKEVPEEPLYDKKVDPLPVEDIASIFSTRVEDHQSSGSVGSAVVDEGSPQLVVDSVDSHFPAENPGGCVGPVERVQSEEEDGSDDGRSYMDVFVVSETENQNHEEGEGLEENVNARVAWIPRSWSVLKPSLINKV 273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu8g01045 273 SMART HOX_1 36 98 IPR001356 GO:0003677
Vimu8g01045 273 Pfam Homeodomain 39 92 IPR001356 GO:0003677
Vimu8g01045 273 PRINTS Lambda-repressor HTH signature 74 90 IPR000047 GO:0003677
Vimu8g01045 273 PRINTS Lambda-repressor HTH signature 65 74 IPR000047 GO:0003677
Vimu8g01045 273 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 28 199 IPR045224 GO:0003700
Vimu8g01045 273 CDD homeodomain 39 95 IPR001356 GO:0003677
Vimu8g01045 273 Pfam Homeobox associated leucine zipper 94 136 IPR003106 GO:0006355|GO:0043565
Vimu8g01045 273 Coils Coil 107 141 - -
Vimu8g01045 273 ProSiteProfiles 'Homeobox' domain profile. 34 94 IPR001356 GO:0003677
Vimu8g01045 273 MobiDBLite consensus disorder prediction 198 225 - -
Vimu8g01045 273 Gene3D - 36 101 - -
Vimu8g01045 273 ProSitePatterns 'Homeobox' domain signature. 69 92 IPR017970 GO:0000981|GO:0006355
Vimu8g01045 273 SUPERFAMILY Homeodomain-like 26 96 IPR009057 -
Vimu8g01045 273 FunFam Homeobox-leucine zipper protein HAT5 32 96 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu8g01045 Vimu-Chr8 17611212 17613332 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu8g01045 3 247 Homeobox Transcription Factor Family AT3G01470 57.661 1.14e-84 253
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Vimu8g01045 Homeodomain 6e-18 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu8g01045 K09338 - gmx:100813420 439.884