Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu8g01044 ATGATCATGGAGATCCCCGATTCCACCGGCGGCGACCGCAACCTTAACGCGCCGCCGCCGCCGCCGCCCCAGCACAACAACCATCACCAGGACGCTCGCTCAGGCCTCGGAATCGACCTTAACGAGATCCCTTCGCCTTCCTCCTTGTTCCCCGAAACCCTACCGGACTCCGTCACCGACGTCGTCCGCACTTATCACGAGAACCCCGGGCCGCCGCCGGGAGCCCCCGCTGCCCTCCCCAGCGGTGGCCTCGCTCCTTGCGCTGCCTGCTCCAAGCCCTGCCCCTCCGCCGCCGGGAGCCACCACCACCTCGTCGTGTGCGACGGCTGCGAGCGCGGCTTCCACCTCGCCTGCGCCGGAATTCGCGGCGGAGGACGCCAGGCTGCGAGCCTGGAGGAGTGGGTCTGCGGCGAGTGCGTCGCCTCTGGAGTGAAGAGCAAGCGGTGGCCGTTGGGAGTGAAGCAGCTTCTCGATATCAACGCTCCGCCACCGAGCGAAGCCGAGGCCGAAGGCGTCGGCGACGGAGACCTAACTGTGCGTGCACTACGGTGTGGTGTGAAGCTAAGCCCTCTTGGTGGGTTTTTCATTCATATTGTGTTATTAGGTTTTCGAAATTTAGAGTGTGTTAGTAGTTCAGTGTCAGAGTTGTTATGTGCTGCCAGCTCAGCTGCTATTCTTTCCAAGTGTGAAAACTCCTTTTCTGGACCTTTGAACGATGTCAGTTTTTGGCCAACTAGGGTGGAACTCTGGCACACCGTTCTGTGGTCTCTACTCTGTTCACATCCTTTGGAATCTGTTATGTTCATGTCAGAGGGGTCTATAAAGCAAACTTTTGGTGATAATTATTTTGGTGCCAGTCCATTTGGTGCCCCTGTGACATATTCAAACTTTTACAATGGAAATGGTACTACTGGCTTCCAAAAGGCTTCTGGAGGTTTGACACAAGCTGATAGAGTGGGTTTTGAGGATATATTGAATCATACTCAATCGATTACTAGAAAATTTGAGGAGGTATGTACAGATTTCCCTCTTAGAATTCATAGTAGTAGTAACAATACGGCTATTATAATACCATCTCGGGGTCCAAATGAGATATTTTTGCAGGCTCTTAAAGATTTTATATCTGAACGGCGCGGTGTACTAGAGGAAGGTTGGCGAGTGGAATTTAGACAATCAGTTAGCAGCTCTGAACTATATGCAGTTTACTGTGCACCTGATGGAAAGATATTTGATTCTGTGTATGAAGTAGCTTGTTATTTGGGGCTAATGTCTGGCTTCAATGCCGTTGAATCTGAAATAAGAAATGAGAGGTCTCTTGTGTCTTTAAGTGGTTCTCTATCTAGGAAAAAAAAATCAACAAGATCTCCCGTAGTCAATGGTTTCATGGAAAAACGGGGAACCATGTTGAATAGTAATTGTAAGGATCCTTCTTCTGAAGGTTTAAATGTGGAGTGTGCTAGTACTAGGGGGAATATCGCAAAACCCTATGAAAGTGGAAGAAAAGAGGATGGACAGTCCTTCCCTCAGCAATTTGAGGATGAACTCCCTCTACAGTTCAAGGACTTCTTTGTTCTCTCATTAGGGAAAGTTGATGTGAGACCATCGTATTATGATGTTAATCTTATATGTCCTGTAGGTTATAAATCTTGTTGGCATGACAAGATTACTGGTTCTCTTTTTACATGTGAAGTTTTGGAGGGTGGTGATTCTGGACCTATATTTAGGATCCAGAGGTGTTCCTGTTCCGAATTTCCTGTTCCAGTTGGGTCAACCATCCTTTCATTGTCAAAATGTTGTCAACTTGCAAGTCAAGCTGATGAAGGCGATGGAAAAACTAATGGTAGTATGGATTTGGATGATGGTGATAATATCCAGATGATGCTTCAAGACCCTTGTGTACCAACTGAAAATGATGTCCTAAGTTGCTCTGCAAACTTCTCGATTAAGGATACTCATACACCAGATGCATTAGGCCCTGCGACTGGTTCAGTTCAAGATAATGTTATAAATTCTTTAGCTGATGAGTTTAATGATGGAATTGGTGAATTTTGTGTGGAAGAGCGGTCATCGTGCTCTGCATGGAGAGTTATTTCTCAGAAGTTAGTTAATGCTTACAAGGATTTCTGCAAGCAGAAAGGAACTCTCAAGTTCTATTGTAACCATGTTAAGAATGAAACCTGCTTACATCAATGGGATTTAGGGAATGTAAAAAGTGATGCATTGGATAAATTTTGTGGTTCCCTCAGTTCAGTTGGCGTCCCAGATGTAATTTATGCAGACAGTGATCTGGAAGGTATCTCTGAGGCTTTGAGAAAATGGTTGGAGCAGGATAGGTTTGGATTGGATGTTGAATTTGTTCAAGAAGTATTGGAACAGCTTCCTGGCGTTGAATCTTTGCAGTATGAACTTTTAAATTGTAGAGATAACAGCTCGTCATTGCCAACAGTAGAAAATGGTTTCTTAGTAGTTGAATGGAGGGATGGGTCAAAACATCAGGAAGAAGCACTTCAGGGTTTATACAGGAGGTCCAAAAAGGCAAGTTTGACTAAAAAAAGCTTTAAGGAAGGTCGTCGTCCACCACTTGGGAAGCCATTATGCTCCAGGGCTCCGGGTGAACTCATTGGTGACATTTTTCAGGCTTGGGAACTTTTAGAGCGATTTAACGAAGTTCTGGACTTGCAAGAACCATTGTCATTAGATGGGCTTGAGAAGGAACTAATTAACCCTTGGTTTGATGGATTGGATTTTCTTGAGAAATCGGAGAGGGACATGGACGAAAGTCAAGTTTTAATTTCCCAAGGAACTGATGGTAGTTGCAGACCATTATTGTCCCCAGGAGGTGATACTGGTCCATCAGGTCCCATGGAAAGTTCTCATGCATTTATTCAAATGGAAACTGAAGCAATGAAGGAGGCTGCTCAAGTTAAGCTCGCATCTTTCACTTATGCCAGATGCTTTGGTGTAACTTTGACCAAGGCTCATAATTCACTGCTGAGAGTGCTAATAGGTGAATTGCTATCAAGGGTGGCTGTCCTGGTGGATCCAAATTCTGAACCTGGAGAAACACGAACAAGACGGGGAAGAAAGAAAGATATGGATAGTGGTCTTCCTGCTAAACGAACCAAACTGAACATGCTTCCTATTAATGAGTTGACCTGGCCAGAATTAGCTCGGAGATATATCTTGGCTTTTTTAACAATGGATGGCAACCTTGAGTCTGCAGAAATTATTGCCCGTGAAAGTGGTAAAGTATTTCGCTGCTTACGAGGTGATGGTGGTTTGCTGTGTGGTGCTCTTACTGGTGTGGCGGGAATGGAAGCAGATGCACAGCTGCTTGCAGAGGCTACAAAGAAAATTTTTGGTTCTTTGAACAGACAAAGTGATGTACTAACTATGGAAGAAGAAGAGTCTGATGCAAAGGGTGCTTCCGAGAAAAATTTGGCAAATGATGGTAATGTTCCTGAATGGGCTCAAATGCTAGAACCTGTCAGAAAGCTACCAACAAATGTGGGCACTCGAATAAGAAAGTGTGTTTATGATGCTCTGGGTAAGGATCCACCAGAATGGGCAAGGAAAAAATTGGAACATTCAATCAGTAAGGAAGTGTACAAGGGCAATGCTTCTGGACCAACAAAGAAAGCAGTTCTTTCAGTGTTGGCTGATGTTGCTGGTGAAGGACCGCAATCAAATCCCAGTAAAGGACAGAAAAGGAAGATTGTTATATCAATTTCTGACATTATGATGAAACGATGTCGCGTTGTATTACGGCGTGCTGCTGCTGCCGATGATTCAAAGGTTTTTTGCAATTTGCTGGGAAGAAAATTGATAAATTCTTCAGATAATGATGATGAGGGGCTTCTTGGTTCTCCGGCCATGGTGGCCCGCCCTATTGACTTCCGCACTATTGACCTTAGACTAGCTGCCGGAGCTTATGGTGGATCTCATGAAGCTTTTCTTGAGGATGTTCGGGAGCTGTGGAACAATGTTCGTGTTGCTTTTGGGGATCAACCTGATTTACTCGAATTGGCTGAAAAATTATCCCAAAACTTTGAATCTTTATATAATGAGGAGGTTGTCATGAATGTGCAAAAACTGATGGAGTATGCTAAACTGGAATGCTTAACTGCAGAAATGAGAAAGGAAGTTGATGATTTTATTGAGTCAATGAAAGAAACTCCAAAGGCCCCTTGGGATGAGGGAGTCTGTAAAGTATGTGGCATTGATAGGGATGATGATAGTGTTTTACTATGCGATACTTGTGATGCTGAGTATCATACATATTGCTTAAACCCTCCCCTCGCAAGGATCCCAGAGGGAAACTGGTACTGTCCTTCCTGTGTTGATGGTAAACATGCAACTCAAGATGTTACAGAACGTACACAGGTTATTGGCAAACGCCGAAGTAAAAAATTCCAGGGTGAAGTTAATTCTCTTTACTTGGAATCCCTTACTCATTTATCAGCTGTAATTGAAGAAAAAGAATACTGGGAGCACAGCTTGGCCGAGAGAACTTTCCTTCTCAAATTTTTGTGTGATGAGTTGCTTAACTCTTCCATGATACGCCAGCACCTTGAGCAATGTGCAGAGTTGTCTGCTGAGTTACATCAGAAATTGCGTGCACATTCTGTAGAGTGGAAAAACCTGAAAACCAGAGAGGACGTTTTGTCCACAAAAGCAGCTAAAATTGATACTTTCTCATTAAATACTGCTGGAGAAGTTGGTCTTAGGGAAGGGGTTACTACTTCATTTTCAAATACTGCTAAATGTCTGGTCCAGCCACATACTGCAGTTGACAATCCTAGTAATTTTGGGGTATTTGTTGATAGTCTGCCTTCAGAAGAGACAACTAAAGAGAAGTATAGGTTTGATAGTGTAGATAAAAGCATATCTGTGACAAATTCAGATTCCGATAGCCAAAATTTGAATTCCTTAGATGTAGAGGGACAATTTAGAAATGTTTCTGGTGCTGTGGAGTCTCAATGTACTGATAAATCTCCCAAATCTTTTCCATCACCAAATATGTCTCAAGAAATAAATGGTTCTGTTGGAGCAGCTGATGCACAGGGTAACCACCATAAATGTGAGGGAAGGGACATGTCTACACCTGTGACATGCCAGCAAGGTGGGGTGCCAGTTGATACTTCACATATGGTTTTGAATGAGTCAGAACCCTATCACCTTGAGCTCAATGCCATCAAGCGTGATATTTCACTATTGCAGGACTCCATAACTAATGTAGTATCACAGCTGCTTAGGCTCTCTGTTCGCCGGGAATTTTTGGGCATTGATTCCATCGGTCGATTGTATTGGGCTTCAACTTTGCCTGGAGGACATTCACGTATAGTTGTTGATGCAAGTGCTGCACTGCTTCATGGAAAAGGAATGTCATTTAGCAGAGACTATGTGGAGAAGTTTTCTGTTCTGCAGAATTGTTCACTAACTGAGAAGGAATCCTCTCCTTTCATGTCTCAGCTTAGAAATGCTTTGGTCAATAGTGCACCATGGATTGCTTATGAAACTGATGCTGAAATTGAAGAGCTCTTAGGTTGGCTGGACGATAATGACCCTAAGGAAAGGGAACTGAAAGATTCCATTATGCAGGGGCCAAGATCAAGATTCCAAGAGTTCCTTAATGCGAAGACCGAAGAGCAGGTTGAGGACCAGGGACCTGTTTCTATTCCCGGAAATAGAGAGAAAACAATATCTAACTCTCTTGTTACAAAGGCGACTTCCTTGCTGGAAAAGAAATATGGTCCCTTCTTTGAGTGGGATATTGAGACGTGGAAGAAGCAAAATAAAAAGTCCAGAACAACTGATGATGAAAAGTTGTTTAGGTGTGAGTGCCTTGAACCCATATGGCCCTATAGGAGACACTGCACATATTGTCACAAAACTGTTTTGAGTGATGTTGAATTTGATGGACACAACGATGGCAAGTGTAATGCAGGTCTTCCGGTTGCAGAGAAGAATAGGAACAAAATTGGATCTTCTAAAGGAAAAGGGAACTTAAGATGTGATACCTCACGAGAGAAATTCAGAGCTGATGCAGAAACAGCTGGAACCAAAATTGGTGGTGGTTCTAAGCTTAGCTCAAGAGTGATTAAATTTTCAAATGAAGAATCCACATGCCCATTTAATTTTGAAGATATATGTTCCAAGTTTGAGACAAATGATTCCAACAAGGAACTTGTCAAAGAAATAGGTCTTATTGGTTCAGATGGTATCCCTTCCTTTGTTCCTTCTGTATCTCCTTTTGTTATCGAGTATGCACAATTCTCAACTTCTAAGGATGACATTATTGGTGTTTTGTCCAAACCAACGGAAAGCTGGGGTTCTCAGGGAAATACTGATGGAGCTGGTGCATGTCTTGACCATAACTCAGGCATTTCTACTGGTAGGTTAGCTGCCAACGAAAGCAATAAATCCATTAAATCATCCTCGGGAGAACAAAGAGATGGGAAATTCCCTTTTTGTGGTCCTGTTTCAGATATAGGAGATGGCTGCTGTGTGGTTCCTATGTCGTCATTGAAACCATTAGTTGGAAAGGTTTCTCACATCTTGAGGCAACTGAAGATTAATCTGCTTGACATGGATGCTGCACTCCCGGCATTTGCTCTGAGACCGTCAAAGGCCGAGTCTGACAGAAGACAGGCTTGGCGTGCATTTGTGAAATCTGCAGAGACTATATACGAGATGATTCAGGCGACATTTACCTTAGAAGATATGATTAAGACGGAGTACTTGAGGAATGACTGGTGGTACTGGTCATCATTCTCAGCTGCTGCGAAATCTTCTACTTTGCCTTCCCTTGCCCTTCGCATATACTCTCTTGATTTAGCCATTATATACGAGAAAACGCCCAATTCTAGTCTTACTGATAGCTCTGAACCTTCTGGCACAGCAGAGACGAGACCCCCGATGAATGTGGATGCAGAGAAATCCAAAGGAAGCCGGAAGTCAAACAGGAAAAGGAAGGAATCAGATGGTTGA 6990 0.4359 MIMEIPDSTGGDRNLNAPPPPPPQHNNHHQDARSGLGIDLNEIPSPSSLFPETLPDSVTDVVRTYHENPGPPPGAPAALPSGGLAPCAACSKPCPSAAGSHHHLVVCDGCERGFHLACAGIRGGGRQAASLEEWVCGECVASGVKSKRWPLGVKQLLDINAPPPSEAEAEGVGDGDLTVRALRCGVKLSPLGGFFIHIVLLGFRNLECVSSSVSELLCAASSAAILSKCENSFSGPLNDVSFWPTRVELWHTVLWSLLCSHPLESVMFMSEGSIKQTFGDNYFGASPFGAPVTYSNFYNGNGTTGFQKASGGLTQADRVGFEDILNHTQSITRKFEEVCTDFPLRIHSSSNNTAIIIPSRGPNEIFLQALKDFISERRGVLEEGWRVEFRQSVSSSELYAVYCAPDGKIFDSVYEVACYLGLMSGFNAVESEIRNERSLVSLSGSLSRKKKSTRSPVVNGFMEKRGTMLNSNCKDPSSEGLNVECASTRGNIAKPYESGRKEDGQSFPQQFEDELPLQFKDFFVLSLGKVDVRPSYYDVNLICPVGYKSCWHDKITGSLFTCEVLEGGDSGPIFRIQRCSCSEFPVPVGSTILSLSKCCQLASQADEGDGKTNGSMDLDDGDNIQMMLQDPCVPTENDVLSCSANFSIKDTHTPDALGPATGSVQDNVINSLADEFNDGIGEFCVEERSSCSAWRVISQKLVNAYKDFCKQKGTLKFYCNHVKNETCLHQWDLGNVKSDALDKFCGSLSSVGVPDVIYADSDLEGISEALRKWLEQDRFGLDVEFVQEVLEQLPGVESLQYELLNCRDNSSSLPTVENGFLVVEWRDGSKHQEEALQGLYRRSKKASLTKKSFKEGRRPPLGKPLCSRAPGELIGDIFQAWELLERFNEVLDLQEPLSLDGLEKELINPWFDGLDFLEKSERDMDESQVLISQGTDGSCRPLLSPGGDTGPSGPMESSHAFIQMETEAMKEAAQVKLASFTYARCFGVTLTKAHNSLLRVLIGELLSRVAVLVDPNSEPGETRTRRGRKKDMDSGLPAKRTKLNMLPINELTWPELARRYILAFLTMDGNLESAEIIARESGKVFRCLRGDGGLLCGALTGVAGMEADAQLLAEATKKIFGSLNRQSDVLTMEEEESDAKGASEKNLANDGNVPEWAQMLEPVRKLPTNVGTRIRKCVYDALGKDPPEWARKKLEHSISKEVYKGNASGPTKKAVLSVLADVAGEGPQSNPSKGQKRKIVISISDIMMKRCRVVLRRAAAADDSKVFCNLLGRKLINSSDNDDEGLLGSPAMVARPIDFRTIDLRLAAGAYGGSHEAFLEDVRELWNNVRVAFGDQPDLLELAEKLSQNFESLYNEEVVMNVQKLMEYAKLECLTAEMRKEVDDFIESMKETPKAPWDEGVCKVCGIDRDDDSVLLCDTCDAEYHTYCLNPPLARIPEGNWYCPSCVDGKHATQDVTERTQVIGKRRSKKFQGEVNSLYLESLTHLSAVIEEKEYWEHSLAERTFLLKFLCDELLNSSMIRQHLEQCAELSAELHQKLRAHSVEWKNLKTREDVLSTKAAKIDTFSLNTAGEVGLREGVTTSFSNTAKCLVQPHTAVDNPSNFGVFVDSLPSEETTKEKYRFDSVDKSISVTNSDSDSQNLNSLDVEGQFRNVSGAVESQCTDKSPKSFPSPNMSQEINGSVGAADAQGNHHKCEGRDMSTPVTCQQGGVPVDTSHMVLNESEPYHLELNAIKRDISLLQDSITNVVSQLLRLSVRREFLGIDSIGRLYWASTLPGGHSRIVVDASAALLHGKGMSFSRDYVEKFSVLQNCSLTEKESSPFMSQLRNALVNSAPWIAYETDAEIEELLGWLDDNDPKERELKDSIMQGPRSRFQEFLNAKTEEQVEDQGPVSIPGNREKTISNSLVTKATSLLEKKYGPFFEWDIETWKKQNKKSRTTDDEKLFRCECLEPIWPYRRHCTYCHKTVLSDVEFDGHNDGKCNAGLPVAEKNRNKIGSSKGKGNLRCDTSREKFRADAETAGTKIGGGSKLSSRVIKFSNEESTCPFNFEDICSKFETNDSNKELVKEIGLIGSDGIPSFVPSVSPFVIEYAQFSTSKDDIIGVLSKPTESWGSQGNTDGAGACLDHNSGISTGRLAANESNKSIKSSSGEQRDGKFPFCGPVSDIGDGCCVVPMSSLKPLVGKVSHILRQLKINLLDMDAALPAFALRPSKAESDRRQAWRAFVKSAETIYEMIQATFTLEDMIKTEYLRNDWWYWSSFSAAAKSSTLPSLALRIYSLDLAIIYEKTPNSSLTDSSEPSGTAETRPPMNVDAEKSKGSRKSNRKRKESDG 2329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu8g01044 2329 SUPERFAMILY FYVE/PHD zinc finger 84 151 IPR011011 -
Vimu8g01044 2329 MobiDBLite consensus disorder prediction 1019 1036 - -
Vimu8g01044 2329 ProSitePatterns Zinc finger PHD-type signature. 87 139 IPR019786 -
Vimu8g01044 2329 SUPERFAMILY Bromodomain 1236 1356 IPR036427 GO:0005515
Vimu8g01044 2329 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 83 145 IPR013083 -
Vimu8g01044 2329 MobiDBLite consensus disorder prediction 1 39 - -
Vimu8g01044 2329 ProSiteProfiles Zinc finger PHD-type profile. 1399 1449 IPR019787 -
Vimu8g01044 2329 ProSiteProfiles FYR domain FYRN motif profile. 514 567 IPR003888 GO:0005634
Vimu8g01044 2329 Coils Coil 1520 1540 - -
Vimu8g01044 2329 Pfam Methyl-CpG binding domain 372 423 IPR001739 GO:0003677
Vimu8g01044 2329 CDD PHD_SF 87 139 - -
Vimu8g01044 2329 MobiDBLite consensus disorder prediction 2288 2329 - -
Vimu8g01044 2329 Gene3D - 1243 1365 IPR036427 GO:0005515
Vimu8g01044 2329 Gene3D - 515 617 - -
Vimu8g01044 2329 MobiDBLite consensus disorder prediction 935 957 - -
Vimu8g01044 2329 MobiDBLite consensus disorder prediction 1016 1036 - -
Vimu8g01044 2329 Pfam WSTF, HB1, Itc1p, MBD9 motif 1 1481 1525 IPR028942 -
Vimu8g01044 2329 Pfam PHD-finger 1401 1447 IPR019787 -
Vimu8g01044 2329 CDD PHD1_Lid2p_like 1401 1446 - -
Vimu8g01044 2329 ProSitePatterns Zinc finger PHD-type signature. 1402 1446 IPR019786 -
Vimu8g01044 2329 ProSiteProfiles Bromodomain profile. 1292 1340 IPR001487 GO:0005515
Vimu8g01044 2329 SMART PHD_3 1401 1447 IPR001965 -
Vimu8g01044 2329 SMART PHD_3 86 140 IPR001965 -
Vimu8g01044 2329 Pfam Bromodomain 1290 1345 IPR001487 GO:0005515
Vimu8g01044 2329 CDD Bromodomain 1247 1354 - -
Vimu8g01044 2329 PANTHER OS02G0192300 PROTEIN 24 2325 - -
Vimu8g01044 2329 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1386 1470 IPR013083 -
Vimu8g01044 2329 SUPERFAMILY FYVE/PHD zinc finger 1390 1451 IPR011011 -
Vimu8g01044 2329 MobiDBLite consensus disorder prediction 2308 2329 - -
Vimu8g01044 2329 ProSiteProfiles Zinc finger PHD-type profile. 84 142 IPR019787 -
Vimu8g01044 2329 MobiDBLite consensus disorder prediction 2288 2302 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu8g01044 Vimu-Chr8 17595313 17608993 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu8g01044 288 2329 C2H2 Transcription Factor Family AT3G01460 45.036 0.0 1612
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Vimu8g01044 Bromodomain 5e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu8g01044 K22768 - gmx:100791814 3194.06