Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu8g01042 ATGACAGTTATTATAACAGTGGTGCTAATATTTGTGGGATTTGTGGTTTTGATCATATTTCATGTTTGTATTTCGGAGAGACTATCTAGGAGAGGATCTATGGTTGAGAGGGGTGCAAATGGGGGAAGAAGCATGTCCATAGATGAGTTGGAGAAGCTTCCATGTTATGATTATGTTGCCAAAGGCAACACAAGCAGCCCTGTGGATTGTGCAGTTTGCTTGGAGAGCCTCATCACTGGAGATAAGTGCAGGTTGTTACCTATGTGCAAGCACAGTTTTCATGCTCAATGTGTGGACACATGGCTTCTTAAGACACCCTTATGCCCAATTTGCAGGTGTAATGCTCATTCTCACAGTGAAAACCAAGTTATAGGTAACAGTGACTACTTGGTAGTACCAAATAGTGTGTCTAGGGAGGGCCAAACTGCCACAAGAAGTCAGCAACATGAGAACATGGTGGTCTTGGTACAGCTGAGAGAAAGCCTAGAAAATGGTCCATCAACAAATGTTGTCGTGGAAAATCCAACATTAGGAAGTCATAACTTGGTCAGGGAGGAGTAG 561 0.4314 MTVIITVVLIFVGFVVLIIFHVCISERLSRRGSMVERGANGGRSMSIDELEKLPCYDYVAKGNTSSPVDCAVCLESLITGDKCRLLPMCKHSFHAQCVDTWLLKTPLCPICRCNAHSHSENQVIGNSDYLVVPNSVSREGQTATRSQQHENMVVLVQLRESLENGPSTNVVVENPTLGSHNLVREE 186
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu8g01042 186 ProSiteProfiles Zinc finger RING-type profile. 70 112 IPR001841 -
Vimu8g01042 186 Pfam Ring finger domain 69 112 IPR001841 -
Vimu8g01042 186 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 2 149 - -
Vimu8g01042 186 SMART ring_2 70 111 IPR001841 -
Vimu8g01042 186 SUPERFAMILY RING/U-box 69 127 - -
Vimu8g01042 186 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 32 117 IPR013083 -
Vimu8g01042 186 FunFam RING-H2 finger protein ATL2K 45 118 - -
Vimu8g01042 186 MobiDBLite consensus disorder prediction 167 186 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu8g01042 Vimu-Chr8 17577801 17578361 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu8g01042 50 132 C3H Transcription Factor Family AT2G18650 45.238 6.90e-17 75.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu8g01042 - K15692 gmx:102667575 306.99