Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu8g01039 ATGGCTTCTAGAATTCTTTCCACCCTGCAGAATGTGTCTTCTTCTTCTACTTCTTCTTTTGTCTCAACCACTAAACAACGTTGTTTAGGCCTATGTTGTCTCTGGCGTAGAAGTTTAAGTGGAACTGGTGCTTCTGCTGCTGCTGATATAGAGCCTAGCAAACCACCAGTGCAAATTGAGCATAATCAGCTTCTGATTGATGGACTGTTTGTTGATGCAGCTTCTGGAAAAACTTTTCCAACCAATGATCCTAGGACTGGAGATACAATTGCCAATGTAGCCGAAGCGGATGTTGAAGATGTAAATCGTGCTGTACGTGCTGCTCGCAAGGCTTTTGATGAGGGACCATGGCCAAGGATGACAGCTTATGAAAGATCACGAATAATTTTGCGTTGTGCTGATATATTGGAGAAACACAATGATGAAGTTGCAGCAATTGAAACATGGGATAATGGGAAGCCATATGAACAGGCTGCAAATGTTGAAATACCTATGGTGGTACGGTTGTTCCGGTATTATGCAGGTTGGGCGGATAAAATTCATGGTTTAACAGTTCCAGCTGATGGACCATACCATGTTCAAACCTTGCATGAACCTATTGGAGTAGCAGGGCAGATTGTTCCTTGGAATTTCCCACTTCTTATTTTTTCATGGAAGGTTGCACCTGCATTAGCTTGTGGTAATACAGTTGTAATGAAAACTGCAGAACAGACACCACTTTCTGCCATTTATGTGTCAAAGCTATTTCATGAGGCAGGACTTCCTCCTGGAGTTCTGAATGTTATCAGTGGCTTTGGTCCTACTGCTGGGGCAGCTCTGTGTACTCATATGGCTGTTGACAAGCTTGCTTTCACAGGATCCTCTCAGACAGGTAGACGGGTATTAGAACTCTCAGCACGCAGTAACCTGAAGCCTGTAACTCTGGAGCTGGGTGGAAAATCTCCATTCATTGTCTGCAAGGATGCTGATATCGATGCAGCTGTTGAGGCAGCACATTCTGCATTATTCTTTAATCAGGGGCAATGTTGTTGTGCTGGTTCTCGCACATTTGTTCATGAAAGCATATATGATGAATTTGTGGAAAAGGCTAAAGCTCGTGCTACCAAACGTGTGGTTGGAGACCCTTTCAAAAGTGGGGTTGAGCAAGGTCCTCAGATTGATTTTGCACAATTCGAGAAGATCCTGAAATACATAAGATCAGGCATTGAAAGTGGTGCTACACTGGAATCTGGTGGTCAAAGAGTTGGCTCGAAAGGCTACTACATCGAACCAACTGACGACATGTTGATAGCAAAAGATGAGATATTCGGTCCGGTACAATCTATCCTGAAATTCAAGGATCTAGAGGAGGTGATAAGGAGGGCCAATGCAACTCATTATGGCCTGGCTGCTGGAGTTTATACTCAGAGTACAGACACTGCCAATACCTTGATGCGGGCATTGCGAGTTGGAACAGTATGGATCAACTGCTATGATGTCTTCGATGCAGCAATACCTTTTGGTGGATATAAAATGAGTGGTCAAGGGAGAGTAAGGGGAATCTACAGCCTTAGAAGCTACCTTCAAGTTAAAGCTTCTGTCACTCCTTTGAAGAATCCTGCATGGCTCTAG 1611 0.4395 MASRILSTLQNVSSSSTSSFVSTTKQRCLGLCCLWRRSLSGTGASAAADIEPSKPPVQIEHNQLLIDGLFVDAASGKTFPTNDPRTGDTIANVAEADVEDVNRAVRAARKAFDEGPWPRMTAYERSRIILRCADILEKHNDEVAAIETWDNGKPYEQAANVEIPMVVRLFRYYAGWADKIHGLTVPADGPYHVQTLHEPIGVAGQIVPWNFPLLIFSWKVAPALACGNTVVMKTAEQTPLSAIYVSKLFHEAGLPPGVLNVISGFGPTAGAALCTHMAVDKLAFTGSSQTGRRVLELSARSNLKPVTLELGGKSPFIVCKDADIDAAVEAAHSALFFNQGQCCCAGSRTFVHESIYDEFVEKAKARATKRVVGDPFKSGVEQGPQIDFAQFEKILKYIRSGIESGATLESGGQRVGSKGYYIEPTDDMLIAKDEIFGPVQSILKFKDLEEVIRRANATHYGLAAGVYTQSTDTANTLMRALRVGTVWINCYDVFDAAIPFGGYKMSGQGRVRGIYSLRSYLQVKASVTPLKNPAWL 536
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu8g01039 536 ProSitePatterns Aldehyde dehydrogenases glutamic acid active site. 308 315 IPR029510 GO:0016491
Vimu8g01039 536 Pfam Aldehyde dehydrogenase family 70 525 IPR015590 GO:0016491
Vimu8g01039 536 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 312 495 IPR016163 GO:0016620
Vimu8g01039 536 ProSitePatterns Aldehyde dehydrogenases cysteine active site. 336 347 IPR016160 GO:0016491
Vimu8g01039 536 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 66 524 IPR016162 GO:0016491
Vimu8g01039 536 Coils Coil 91 111 - -
Vimu8g01039 536 FunFam Mitochondrial aldehyde dehydrogenase 2 314 497 - -
Vimu8g01039 536 SUPERFAMILY ALDH-like 58 529 IPR016161 GO:0016491
Vimu8g01039 536 PANTHER ALDEHYDE DEHYDROGENASE-RELATED 48 525 - -
Vimu8g01039 536 FunFam ALD5p Mitochondrial aldehyde dehydrogenase 66 322 - -
Vimu8g01039 536 CDD ALDH_F2BC 59 528 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu8g01039 Vimu-Chr8 17568249 17571783 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu8g01039 1 536 Aldehyde Dehydrogenase Gene Family AT3G48000 70.111 0.0 810
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu8g01039 K00128 - gmx:100798892 927.161