Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu8g01033 ATGTCAGAAAAGATGTATCCTAGGTTGTTGGTTTTGGACCATACCCATTTGAAGATGGCATGGGTTAAGCATCAAATCCAGCAGAAAGATGGTTCCTTGAGCTACTCACCACCACCCCTTCTGTCTTCCTCTTCTTCTTCACCACCTCCTTACCCTCCTGGTGCTGCTTTCCACAAAGAATCACCACCTTCAACAGCAGCAACAGCATCATCTGGCACTAGAATTAGTCCTGCTGTTCTCTTCATCATAGTTGTTCTTGCTGTTTTGTTTTTCATCTCTGGCATCCTCCACCTGCTTGTTAGATTTCTCATAAAGTACCCATCTTCTTCTGCATCTGCTCAATCCAACAGACACCCGGAAATCTCCACATCTGATGCTCTTCAGCGGCAGCTGCAGCAGCTCTTCCATCTCCACGACTCTGGCTTGGATCAAGCTTTCATTGATGCTCTTCCTGTGTTTCAGTACAAGGAGATTGTTGGGTTGAAAGAGCCCTTTGACTGTGCTGTTTGTTTGTGTGAGTTTTCTGAGAAGGATAAGCTGAGGTTGTTGCCTATGTGCAGCCATGCTTTTCACATCAGTTGTATAGACACATGGCTTCTGTCAAACTCCACATGCCCTCTTTGCAGAGGAACGCTTCTCACTCAGGGATTTTCTATTGAGAATCCTATATTTGATTTTGATGATCTGAGGGAGGATGAAGGGTGTCCTTGTAATGGGGAGAGTGGATTCAGTACCAGACAGAAAACAGTGGTGGTTGAAGAAAGTGTGGAGAAAGGGGTTTTCCCTGTGAGGCTTGGGAAATTCAAGAAGCTGAATGTGGAGGGTGGAGAGAGAGAAGTGGGAGAGACAAGTAGCAGTAATTTGGATGCAAGAAGGTGTTACTCAATGGGGTCTTACCAATATGTGGTTGGCAATTCAGACCTGAGGGTGGCCTTAAACCATGAAATTGATAAAGGTCAAAACACAAGGCTCACCAAAGGAATGGCCCATGATGATGGGAAGTTTTCAGTGGAGGGGGATGTGGAAGCAAAGAAGATTAGTAGTGTCAGTAAAGGTGACAGCTTTTCTGTGTCAAAAATCTGGTTGTGGCCAAAGAAGGGGAAATTACCCTCTTCTTTGGATGCTCAAATGGCCATGCCAGTGCCATCTTTTCTAAACACAGATTTTCAAAGGAGGAGGGAAACAGAAGGGGCTTGA 1197 0.4528 MSEKMYPRLLVLDHTHLKMAWVKHQIQQKDGSLSYSPPPLLSSSSSSPPPYPPGAAFHKESPPSTAATASSGTRISPAVLFIIVVLAVLFFISGILHLLVRFLIKYPSSSASAQSNRHPEISTSDALQRQLQQLFHLHDSGLDQAFIDALPVFQYKEIVGLKEPFDCAVCLCEFSEKDKLRLLPMCSHAFHISCIDTWLLSNSTCPLCRGTLLTQGFSIENPIFDFDDLREDEGCPCNGESGFSTRQKTVVVEESVEKGVFPVRLGKFKKLNVEGGEREVGETSSSNLDARRCYSMGSYQYVVGNSDLRVALNHEIDKGQNTRLTKGMAHDDGKFSVEGDVEAKKISSVSKGDSFSVSKIWLWPKKGKLPSSLDAQMAMPVPSFLNTDFQRRRETEGA 398
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu8g01033 398 Pfam Ring finger domain 166 209 IPR001841 -
Vimu8g01033 398 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 71 361 - -
Vimu8g01033 398 SMART ring_2 167 208 IPR001841 -
Vimu8g01033 398 FunFam RING-H2 finger protein ATL46 129 214 - -
Vimu8g01033 398 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 142 215 IPR013083 -
Vimu8g01033 398 ProSiteProfiles Zinc finger RING-type profile. 167 209 IPR001841 -
Vimu8g01033 398 MobiDBLite consensus disorder prediction 42 57 - -
Vimu8g01033 398 MobiDBLite consensus disorder prediction 32 69 - -
Vimu8g01033 398 SUPERFAMILY RING/U-box 146 215 - -
Vimu8g01033 398 CDD RING-H2_EL5-like 166 209 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu8g01033 Vimu-Chr8 17506317 17509508 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu8g01033 64 368 C3H Transcription Factor Family AT2G18650 40.476 8.60e-59 195
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu8g01033 - - gmx:100806337 631.328