Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu8g01022 ATGGCTCGATCTGTTACACGAAGAAGAACCCTTCCCTTTTCTGAGGAGATCTGCGATGCCGTTCTTGATCTAGGGTTTCCCCCTTCAGCTGTGGTTCCAAATCTAGGGTTTCGAAGACGAGGAGTGCGATTTCGGGGCGAAGCTGGGATCGACACGGAAGATGGAGGATTATGCATGGGTGTGGTGGTGACCAGTGGAAACACAATCGGCACATGTGGCCTGTACCTGCTAACGCGACCACTGAAGATGTTGTTGTGGTCTAGGTATGTGGTTACTGATTTGGGGAAAATGTTAACTGATGGACGCAAGATTCGTGCTGGTGATTGTGCACTCTTCAAGCCACCTAGGGACTCCCCTCCTTTTATTGGAATAATTCGCAAGCTATCTTATGATAAACAAGAAAGTCCAAGTTTAGAAGTACATTGGCTTTATCGACCTGCTGATTTAAAACTTGCTAAAGGAATTGTGCTGGAAGCTGCACCGAACGAAGTTTTTTACTCCTTTCACAAGGATGAAACACCTGCTGCATCATTACTCCATCCGTGTAAAGTCGCATTTCTTCGTAAAGGTGTTGAACTTCCTTCAGGGATATCCGCATTTGTCTGTCGACGAGTTTATGACATTGAGAACAACTGTTTATGGTGGCTAACTGATAAGGACTACCTTAATGAACAACAGGAAGAAGTTAACCAGCTATTAGACAAGACAAAACTAGAAATGCATGGGGCTGTGCAGTCAGGAGGCCGTTCTCCAAAACCCTTGAATGGTCCAGCATCAACACAGTCTTTGAAATCTGGTTCTGACAACATACAAAATAGTTCTTCGTTTGGTGCACAGGGTAAGGGTAAAAAGAGAGAGCGGGGTGATCAGGGTTCTGATTCATCTAAAAAGGAGCGGTTGTTTAAGATAGAAGATGGAGATTCTGGTCAGTTTAGACCGGAGAGCATGTTAAAGTCTGAGATTGCTAAAATAACTGATAAAGGTGGGCTTGTGGACTTTGAAGGAGTTGAAAAACTGGTACAGCTTATGCAGCCTGACAGTGCTGACAAAAAAATTGATTTACCTGGGCGGATAATGCTTGTTGATGTAATTGCACTTACAGACCGGTATGACTGTCTGGGCTGGTTTGTACAGCTTAGGGGTTTACCTGTATTGGACGAATGGCTGCAGGAGGTCCACAAGGGCAAAATTGGTGATGGAAATCCCAAAGAAAGTGACAAGTCTGTTGATGATTTTTTATTAGCTTTACTGCGTGCATTGGATAAGCTTCCTGTGAACCTTCATGCACTGCAGACCTGTAATGTTGGAAAGTCTGTCAATCATTTACGCACGCACAAGAATGCTGAAATTCAGAGGAAAGCCCGGAGTTTAGTGGACACATGGAAGAGGCGTGTGGAAGCTGAAATGAACATGAATGATTCAAAGTCTGGTTCAAACCGTGCTGTTTCTTGGCCAGCAAAGCCAGCAAATTCTGAGTCTCCTCATGTTGGAAATAGGAAAACAGGTGGGTCCTCTGATAACGTCGTGAAGAGCTCTGTAATTCAACCCTCATTATCTAAAAGTTCCCAATCTAAGTTAAGTTCTGGAGAAGCTTTGTCGAAGTCTTCATCTCCTGGCTCTACTAAATCATTGACTACCCCAGCAGGCGTGAACTCAAAAGATCAAAACAGTAAATTCTTTGTTGGAGCTGCAACGTCAGATCTACCTTTGACACCTATCAAAGAGGAGAGGAGCAGCAGTTCCAGTCAATCTCAAAATAACAGTGTAACTTGTTCTAGTGAACATGCTAAGACTATTGGTTCTTGCAAGGAAGATGCAAAGAGCTCCACTGCAGTGTCAATGAGTGGAAGTAAAATTCATGGTTGTACATCTCGAATTCGCAAGTCAAGCAATGGTGTACATGGGGCTGGTGCTGCAGTAGGTCAAAAGGAGCACAACTCTGCTAAACATTCAACCAGAAATTCACCTTCTGAGAAAGTATCACCAACTCGAGCATCCCACGAAAAATCAGTTGACCAGGCCATTGCCGATCAAGGGAATAACCAGCGATTGATTCTTAGGTTGCCAAACACTGGTCGCAGTCCATCAAGGGGAGCTAGCGGGGGCTCTTTTGAAGAACCAGCTACAACGAGCAGCAAAGCTTCATCTCCTGCAGACCGGAATGATAATCAGGACAGAAGAGTGAAAACTAAGGCGGAGTGTTTGCTGACCCATGTGTCAAATATGATGAATGAGGCTTGTGATGCTAATGATGCTTTGATTGGTGATGAAGGTAAGGGTACTCCAATAGTTGATGAGCGAAGCAGGGCAAATGAAGATAGTGATAAGGTATTGGAAACATCAAAGCCAACTAGTTTGCCATCTGGGTTTGTTTCCAGATCAGGGCAGACTTATGATGCTTCTTTAAGCCCCATGAATGCATTAGTTGAAAGTTGTGTAAAGTTTTCTGAAGCAAGTTCATCCGTTTCCCATGGAGATGATGGGATGAACCTACTAGCTACTGTGGCTGCTGGGGAAATATCCAGATCAGAAAATGCGTCACCTGTGGCATCCCCCGAGAGAAAGTCTCCTGCAGCAGATGAAATGTGCTCAGGCAATGATTTGAAGTTAAAGCATTCTGGTGAAGCAGCTGTTCGCACCCTTTCAGAGTTGAATGGTAGGGCTACAGGAGAGCATCCTTTGAATACAGTTGATTCATTGCAGATAAAAAATGAGTTGAGGCATCCTGCCATGACTCTGTCACGTGATTTTTCAGGGGATGGTGAAACCATTTCATCTTCCCATGACACTAACATACATGTCTCCCCTACAAATTTGTCACAAAATGTTGAAGGTCCATGCATACGGCCCGAAACCAAAGAAAATGCTTCTGTCACTATACTGACAGCTAAAAAGGAGAGTAATGCAGACACTGGAGTTTCAGACTCTAAATTAATGCCAAGGGCCTACTCATTGGATGATGATCAGAAGGTTGATCACATGAATGAGGAGATCATTGAGGATGAGAAAATGTTGGTTTCAAAACCTGTTACAAATGTTGAGTCAGAAAACGAATCTGGTGAAAAGCAGCCGGAGTTAACTTCAGATGTGGATAATGAGAACCAGATTAGTGTGGAGAAAGCAACTGGTACTGGAATACTAGTGGAAAAGGCCTCTCCAATTGCTGAAAACTGTGAGTCTGCATATTTAAAAAAGGAGTCACCTGCTTCTAGCAATGCTTTAATTGTACCCAAGGATGAAAGTGCTGATGACATGAAGTCAGTTGTGATTGAGCCTGATGTAAGACCAACGGAGCAGGATTCTTCTGCTCCAGATGATTCTAATGAATGTGCTGAAGTTAATATGGGCAAAAAAGAAACCATTGGTCCGTGTTCTGGTTCATCAGTTCAGCCTGATTTACAAGCAATGCCTAGGACAGAGAGTGAAGTGTCCAAATCATGTGAGCAAAAGCTAGATGCAAGTCTGTCTGAAGTATCGGGAGAGAGGCATGCATGCTCTGCAGCTGGTGCTGATGCAGCTGTAAAACTTGACTTTGATTTAAATGAAGGCTTTCCTGTTGATGATGTAAGCCAAGGGGAGATTGCCAGACAGGATGATCCTATCACATCATCTGCAGTTCATGTTCCTTGCCCATTGCCTTTTCCTATTTCGTCCATCTCTGGTGGCTTCCACCCTTCAATTACCGTTGCTTCTGCTGCTAAAGGGCCCGTTATTCCACCAGAAAACCCATTGAGGATCAAGGGGGAGCTTGGATGGAAAGGATCTGCAGCCACCAGTGCATTTCGACCAGCTGAACCTAGGAAAAATGCTGAGATGCAGTCCTCTACTAATGATATTAGTTCTGTTGATGTCACTTCTATTAAACAAAATCGCGCCCCCTTAGATTTTGACTTGAATGTGGCAGATGAAAGATGTTTTGAAGATGTTGGTTCACATGGTTCTTTAGATTCTGGACCACATGATCGTAGTGTGGGACTTGATCTTGATTTAAACAGAGTTGATGAGACTCCTGAAATTGGTACTTTCTCTATAAGCAAACTGGATATCCCTGCTTTACCAAGCAAGCCGTCATTGTCTAGTGGGTTGTCTAATGGTGGAAGTGTCTCAAGAGACTTTGACTTAAATAACGGGCCTGGCCTTGAAGAAGTTGGCAGTGAAGTCCCTACACGTAGTCAGCAGCAGATGAAAAATTCTGTGCCGTTTCCAAGTGCTGTTCATAGCACGAGAACAAACAATGCTGAATATGGAAATTATTCTGCATGGTTTCCTCCGGGCAATTCCTATTCTGCAATTACTGTCCCGCCACTTCTATCTGGTAGAGGGGAGCAGAGTTATGTTACTGGTGCTGGGGCACAACGAATAATGGGTCCAACAGGTAGCACTCCTTTCGGTCCTGAAATCTACAGGGGATCAGTACTTTCATCCTCCCCGGCTGTTGCTTATCCATCCACTACAGCTTTTCCATATCCTGGATTTCCATTTGAAACCAATTTTCCATTATCCTCAAACTCCTTTTCTGGTTCAACGGCATTTATGGATTCGTCCAATGTGGGCGGGCTATGTTTTCCTACCATGCCTACACAGCCAGTTGGGCCTGGTGGTGTCGTTTCATCCACATATTCTCGTCCATATGTTATGAGTCTTCCAGGTGGTACTAGTAATGTGATACCTGACAGCAGAAAATGGGGAAGTCAAAGTCTGGATCTGAATTCAGGCCCTGGTGTAGCAGATACAGAACGGAGGGACGAAAGATTGCCTTCAGGATTGCGGCAAATGTCTGTCCCGAACCCACAAGCCTCAATCGAGGACCACTTGAAGATGTTTCAGATGGCAGGTGCTGCTGCATTGAAAAGAAAAGAGCCTGATGGTGGTTGGGATGCTGAAAGATTCGGTTATAAGCAACACTCACGGCAATAG 4917 0.4432 MARSVTRRRTLPFSEEICDAVLDLGFPPSAVVPNLGFRRRGVRFRGEAGIDTEDGGLCMGVVVTSGNTIGTCGLYLLTRPLKMLLWSRYVVTDLGKMLTDGRKIRAGDCALFKPPRDSPPFIGIIRKLSYDKQESPSLEVHWLYRPADLKLAKGIVLEAAPNEVFYSFHKDETPAASLLHPCKVAFLRKGVELPSGISAFVCRRVYDIENNCLWWLTDKDYLNEQQEEVNQLLDKTKLEMHGAVQSGGRSPKPLNGPASTQSLKSGSDNIQNSSSFGAQGKGKKRERGDQGSDSSKKERLFKIEDGDSGQFRPESMLKSEIAKITDKGGLVDFEGVEKLVQLMQPDSADKKIDLPGRIMLVDVIALTDRYDCLGWFVQLRGLPVLDEWLQEVHKGKIGDGNPKESDKSVDDFLLALLRALDKLPVNLHALQTCNVGKSVNHLRTHKNAEIQRKARSLVDTWKRRVEAEMNMNDSKSGSNRAVSWPAKPANSESPHVGNRKTGGSSDNVVKSSVIQPSLSKSSQSKLSSGEALSKSSSPGSTKSLTTPAGVNSKDQNSKFFVGAATSDLPLTPIKEERSSSSSQSQNNSVTCSSEHAKTIGSCKEDAKSSTAVSMSGSKIHGCTSRIRKSSNGVHGAGAAVGQKEHNSAKHSTRNSPSEKVSPTRASHEKSVDQAIADQGNNQRLILRLPNTGRSPSRGASGGSFEEPATTSSKASSPADRNDNQDRRVKTKAECLLTHVSNMMNEACDANDALIGDEGKGTPIVDERSRANEDSDKVLETSKPTSLPSGFVSRSGQTYDASLSPMNALVESCVKFSEASSSVSHGDDGMNLLATVAAGEISRSENASPVASPERKSPAADEMCSGNDLKLKHSGEAAVRTLSELNGRATGEHPLNTVDSLQIKNELRHPAMTLSRDFSGDGETISSSHDTNIHVSPTNLSQNVEGPCIRPETKENASVTILTAKKESNADTGVSDSKLMPRAYSLDDDQKVDHMNEEIIEDEKMLVSKPVTNVESENESGEKQPELTSDVDNENQISVEKATGTGILVEKASPIAENCESAYLKKESPASSNALIVPKDESADDMKSVVIEPDVRPTEQDSSAPDDSNECAEVNMGKKETIGPCSGSSVQPDLQAMPRTESEVSKSCEQKLDASLSEVSGERHACSAAGADAAVKLDFDLNEGFPVDDVSQGEIARQDDPITSSAVHVPCPLPFPISSISGGFHPSITVASAAKGPVIPPENPLRIKGELGWKGSAATSAFRPAEPRKNAEMQSSTNDISSVDVTSIKQNRAPLDFDLNVADERCFEDVGSHGSLDSGPHDRSVGLDLDLNRVDETPEIGTFSISKLDIPALPSKPSLSSGLSNGGSVSRDFDLNNGPGLEEVGSEVPTRSQQQMKNSVPFPSAVHSTRTNNAEYGNYSAWFPPGNSYSAITVPPLLSGRGEQSYVTGAGAQRIMGPTGSTPFGPEIYRGSVLSSSPAVAYPSTTAFPYPGFPFETNFPLSSNSFSGSTAFMDSSNVGGLCFPTMPTQPVGPGGVVSSTYSRPYVMSLPGGTSNVIPDSRKWGSQSLDLNSGPGVADTERRDERLPSGLRQMSVPNPQASIEDHLKMFQMAGAAALKRKEPDGGWDAERFGYKQHSRQ 1638
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu8g01022 1638 MobiDBLite consensus disorder prediction 240 314 - -
Vimu8g01022 1638 MobiDBLite consensus disorder prediction 1375 1408 - -
Vimu8g01022 1638 MobiDBLite consensus disorder prediction 468 554 - -
Vimu8g01022 1638 MobiDBLite consensus disorder prediction 1257 1277 - -
Vimu8g01022 1638 Pfam BAH domain 104 209 IPR001025 GO:0003682
Vimu8g01022 1638 MobiDBLite consensus disorder prediction 1121 1145 - -
Vimu8g01022 1638 MobiDBLite consensus disorder prediction 673 718 - -
Vimu8g01022 1638 Gene3D - 92 315 IPR043151 -
Vimu8g01022 1638 SMART TFS2_5 389 467 IPR003617 GO:0005634
Vimu8g01022 1638 ProSiteProfiles TFIIS N-terminal domain profile. 383 468 IPR017923 -
Vimu8g01022 1638 MobiDBLite consensus disorder prediction 1117 1145 - -
Vimu8g01022 1638 MobiDBLite consensus disorder prediction 752 793 - -
Vimu8g01022 1638 MobiDBLite consensus disorder prediction 1619 1638 - -
Vimu8g01022 1638 MobiDBLite consensus disorder prediction 252 279 - -
Vimu8g01022 1638 Gene3D Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 334 469 IPR035441 -
Vimu8g01022 1638 MobiDBLite consensus disorder prediction 572 630 - -
Vimu8g01022 1638 MobiDBLite consensus disorder prediction 920 945 - -
Vimu8g01022 1638 MobiDBLite consensus disorder prediction 1562 1596 - -
Vimu8g01022 1638 SMART BAH_4 102 217 IPR001025 GO:0003682
Vimu8g01022 1638 PANTHER BAH AND TFIIS DOMAIN-CONTAINING PROTEIN-RELATED 96 1638 - -
Vimu8g01022 1638 SUPERFAMILY Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 371 479 IPR035441 -
Vimu8g01022 1638 MobiDBLite consensus disorder prediction 494 554 - -
Vimu8g01022 1638 CDD TFIIS_I 391 466 - -
Vimu8g01022 1638 MobiDBLite consensus disorder prediction 1617 1638 - -
Vimu8g01022 1638 MobiDBLite consensus disorder prediction 1011 1034 - -
Vimu8g01022 1638 MobiDBLite consensus disorder prediction 280 311 - -
Vimu8g01022 1638 MobiDBLite consensus disorder prediction 471 486 - -
Vimu8g01022 1638 Pfam TFIIS helical bundle-like domain 416 465 IPR017923 -
Vimu8g01022 1638 ProSiteProfiles BAH domain profile. 102 217 IPR001025 GO:0003682
Vimu8g01022 1638 MobiDBLite consensus disorder prediction 843 862 - -
Vimu8g01022 1638 MobiDBLite consensus disorder prediction 570 727 - -
Vimu8g01022 1638 MobiDBLite consensus disorder prediction 760 779 - -
Vimu8g01022 1638 MobiDBLite consensus disorder prediction 1386 1408 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu8g01022 Vimu-Chr8 17388250 17396470 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR IWS1 Vimu8g01022 BAH 3.5e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu8g01022 - - gmx:112998769 2452.55
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu8g01022 8 17388250 17396470 Vimu10g01174 10 11475038 11482154 ECH
Vimu8g01022 8 17388250 17396470 Vimu8g01022 8 17388250 17396470 ECH