Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu8g01011 ATGGAGATTCAACAATCGCTGAAGCTCACCATCCACAAGAAATGGCCATCGTCACCAAAGAAAACACCAAAAGATTCAGAACCGATAAACACCACTGCAACTCCCAAGCTCAAATGGAAGAAAATCTTCTTTCACACTAAAACCAAACCCAAAATCCAAACCCCCCCAGATGAGTTCCTCTGCCCTGTTTCCCGTTCCCTCATGTTCGACCCCGTCATCGTCTCCTCCGGCCACTCCTTCGAACGTTCCTCCGTCGAAGCATGTAAAAATCTCAACTTTACACCACAACTCCCCGACGGCACTACCCCCGATTTCTCCACCCTCATCCCCAACCTCGCCCTTAAATCCGCCATCCTCAAGTGGTGCCACACCACCCACACACCCCCTCCTCTCCCCCACAACAACCTCGTGCAGCAAACCTCAATCTCTCCTGACACGAAACTAGTACAGCAGACCTCGATTTCCCCAGACACCCCCAACTTAAACCTCGTACAAACCTCGATCTCCCCTACCATAGAAGAAAAGCTCTCCCACAGAGATCCGATCCTGGATTCCCTGGACGAAAACCCACCCTCCAGCAACCTCCGCCGCCACGCGGAAACCGAGGTGCCCATAAGACCGACGCATCTGTACACGAGCTCCGAGGAATCCATAGCTACATCCTCGGCCTCGACGCCGCCGTTTCAACTCGCCACGCGCCCCAGTTGCTGCTACTATTCTTCCCCTTCCTCGTCAGAAATCGAACCTGCCGCAACGCCAGAAGAAGAAGAAATCACAGGGAAGCTCAAAAGCTCACAACAGAACATAATCGAGGAAGCTCTTCTCTCTCTGAGAGAACTCACCCGAGTGAGAGAAGAAACCCGGGTTCAACTCTGCACTCCGCGGATACTGTCTGCGTTACGCTCCCTCGTGTTGTCGAAACACTTGAACGTTCAGGTGAACGCTTTGGCTTCAGTGGTGAACCTTTCTCTGGAGAAGAGTAACAAAGTGAAGATCGTGCGGTCGGGGATGGTGCCACCGTTGATCGAGGTTCTGAAATTTGGATCCCCTGAGGGGCAGGAACACTGTGCTGGCGCGTTGTTCAGTTTATCTCTCGAAGACGATAACAAAACCGCCATTGGTGTTCTGGGTGGTTTGGGTCCGCTGCTTCAGATGCTCCGAGTCGAGAGCGAGCGGACTCGGCACGACTCGGCCTTGGCGCTTTACCATTTGTCTTTGGTTCAGAGTAACCGGTCCAAGATGGTTAAACTCGGTTCGATTCCGGTTCTTTTAAGTATGGTTAAATTGGGTCACATGACGGGCCGGGTTTTATTGATCTTGGGGAACTTGGGTTCCGGGTCGGATGGACGGGCCGCGATGTTGGATGCGGGTGTTGTAGAGTGTCTGGTCGGGTTGCTGAGTGCACCCGACTTGGCTACCGGATCGACTCGGGAGAGTTGTGTGACGGTGATGTACGCGTTGAGTCACGGCGGTTTAAGATTTAAGGCGGTGGCAAAGGCGGCGGGGCTGGTGGAGGTGTTGCAGAAGGTGGAGAAAGTGGGGAGTGAGAGGGCTAGGCATAAGGTGAGAAAGATTTTGGAGATGATGAGGGCCAAGGAGGTGGAGGAGGAAGATGTGGATTGGGAAGAGTTACTTGACTCGGGGCTGGGTTGTCGGACTCGGGGCCGACTCGGTGGCGGGTTGGACGAGTCGAGTGCTAACTCGGCCGAGTTTTGA 1716 0.5385 MEIQQSLKLTIHKKWPSSPKKTPKDSEPINTTATPKLKWKKIFFHTKTKPKIQTPPDEFLCPVSRSLMFDPVIVSSGHSFERSSVEACKNLNFTPQLPDGTTPDFSTLIPNLALKSAILKWCHTTHTPPPLPHNNLVQQTSISPDTKLVQQTSISPDTPNLNLVQTSISPTIEEKLSHRDPILDSLDENPPSSNLRRHAETEVPIRPTHLYTSSEESIATSSASTPPFQLATRPSCCYYSSPSSSEIEPAATPEEEEITGKLKSSQQNIIEEALLSLRELTRVREETRVQLCTPRILSALRSLVLSKHLNVQVNALASVVNLSLEKSNKVKIVRSGMVPPLIEVLKFGSPEGQEHCAGALFSLSLEDDNKTAIGVLGGLGPLLQMLRVESERTRHDSALALYHLSLVQSNRSKMVKLGSIPVLLSMVKLGHMTGRVLLILGNLGSGSDGRAAMLDAGVVECLVGLLSAPDLATGSTRESCVTVMYALSHGGLRFKAVAKAAGLVEVLQKVEKVGSERARHKVRKILEMMRAKEVEEEDVDWEELLDSGLGCRTRGRLGGGLDESSANSAEF 571
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu8g01011 571 PANTHER U BOX DOMAIN-CONTAINING 48 530 - -
Vimu8g01011 571 Gene3D - 255 434 IPR011989 -
Vimu8g01011 571 SUPERFAMILY ARM repeat 260 522 IPR016024 -
Vimu8g01011 571 SMART Ubox_2 58 121 IPR003613 GO:0004842|GO:0016567
Vimu8g01011 571 FunFam RING-type E3 ubiquitin transferase 13 130 - -
Vimu8g01011 571 Pfam U-box domain 56 124 IPR003613 GO:0004842|GO:0016567
Vimu8g01011 571 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 38 138 IPR013083 -
Vimu8g01011 571 MobiDBLite consensus disorder prediction 1 31 - -
Vimu8g01011 571 Gene3D - 435 539 IPR011989 -
Vimu8g01011 571 ProSiteProfiles U-box domain profile. 54 128 IPR003613 GO:0004842|GO:0016567
Vimu8g01011 571 Pfam Armadillo/beta-catenin-like repeat 328 364 IPR000225 GO:0005515
Vimu8g01011 571 SMART arm_5 446 489 IPR000225 GO:0005515
Vimu8g01011 571 SMART arm_5 284 324 IPR000225 GO:0005515
Vimu8g01011 571 SMART arm_5 366 406 IPR000225 GO:0005515
Vimu8g01011 571 SMART arm_5 325 365 IPR000225 GO:0005515
Vimu8g01011 571 FunFam RING-type E3 ubiquitin transferase 253 529 - -
Vimu8g01011 571 SUPERFAMILY RING/U-box 52 124 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu8g01011 Vimu-Chr8 17259804 17263189 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu8g01011 56 571 U-box Gene Family AT5G40140 55.429 1.91e-173 501
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu8g01011 - - gmx:100798675 834.328
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu8g01011 8 17259804 17263189 Vimu10g01164 10 11284193 11288261 ECH
Vimu8g01011 8 17259804 17263189 Vimu8g01011 8 17259804 17263189 ECH
Vimu8g01011 8 17259804 17263189 Vimu6g00790 6 8901420 8906348 PCT