Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu8g01009 ATGGAAACAGGCGGAACCGAAGCCTTTCCAGATTTGGGTAAACACTGTCAACATAGCGATTGCCACCAACTCGATTTTCTTCCTTTCACATGCCAAGGTTGCCAAAAGGTGTTTTGTTTGGAGCACAGATCCTTCAAGTCCCATGCGTGCAAGAATTCCGACCACAACAGCAGAAAAGTTGTTGTCTGCGAAACGTGTTCCATGTCCATTGAGACCACCGGCTATGTGGGACAGGAAGAGGAGGCAATCTTGAAGAAGCACCAAAAGTCTGGGAACTGTGATCCCACCAAGAAGAAGAAACCCATTTGCCCTGTCAAGCGCTGCAAGGAGGTTTTGACTTTCTCCAACACCAGCACCTGTAAAACTTGCCACATTAAGGTGTGCCTCAAGCACCGTTTCCCTGCTGATCATGCTTGCAGCAGAAGAGTTTCAGCTTCTTCCTCATCCTCTGTTGCTGATGGTGGATGGAAGAATCGGTTTTTGGCTGCTTTAGGTTCAAGGGCTGGACAGAACTGTGCCAAAACTGGTTCATCTCGTTCTACCTCTCCTCCTAGCACTCCTTCTGTCAAGGCCTATTGA 579 0.4836 METGGTEAFPDLGKHCQHSDCHQLDFLPFTCQGCQKVFCLEHRSFKSHACKNSDHNSRKVVVCETCSMSIETTGYVGQEEEAILKKHQKSGNCDPTKKKKPICPVKRCKEVLTFSNTSTCKTCHIKVCLKHRFPADHACSRRVSASSSSSVADGGWKNRFLAALGSRAGQNCAKTGSSRSTSPPSTPSVKAY 192
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Vimu8g01009 192 ProSiteProfiles Zinc finger AN1-type profile. 97 147 IPR000058 GO:0008270
Vimu8g01009 192 PANTHER ARSENITE INDUCUBLE RNA ASSOCIATED PROTEIN AIP-1-RELATED 8 185 - -
Vimu8g01009 192 Pfam AN1-like Zinc finger 16 53 IPR000058 GO:0008270
Vimu8g01009 192 Pfam AN1-like Zinc finger 103 141 IPR000058 GO:0008270
Vimu8g01009 192 Gene3D - 2 69 IPR035896 -
Vimu8g01009 192 SMART AN1_Zf_4 16 55 IPR000058 GO:0008270
Vimu8g01009 192 SMART AN1_Zf_4 103 144 IPR000058 GO:0008270
Vimu8g01009 192 MobiDBLite consensus disorder prediction 169 192 - -
Vimu8g01009 192 SUPERFAMILY AN1-like Zinc finger 9 59 IPR035896 -
Vimu8g01009 192 MobiDBLite consensus disorder prediction 170 192 - -
Vimu8g01009 192 ProSiteProfiles Zinc finger AN1-type profile. 10 58 IPR000058 GO:0008270
Vimu8g01009 192 SUPERFAMILY AN1-like Zinc finger 95 145 IPR035896 -
Vimu8g01009 192 Gene3D - 78 154 IPR035896 -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Vimu8g01009 Vimu-Chr8 17245552 17246576 Dispersed/Tandem
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu8g01009 1 172 C2H2 Transcription Factor Family AT3G28210 59.302 5.81e-75 221