Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu8g01008 TTGCTTCTAGAATCTTCCTTTTTTATTCATTGTGTATTATTGAATATTCTTCGAATCTATTCATCAGTTTTTCACGAAACTCAGAACCATATCGGTGTATCCATGGCACCAGGTGGAACCGAAACTTTTCCAGATTTGGGTAAAAACTGCCAGCACCGCGACTGCAACCGCCTCGATTTTCTTCCTTACATCTGCGACGGTTGCCAACGGGTGTTTTGTTCGGAGCATAGATCCTACAAATCCCATGCGTGTCCGAAATCTGACCTAAGCAGAAAAGTGATTGTTTGCCAAACATGTTCCATGTCCATTGAGACCACCGGCTACGTGGGACAGGACGAGGATGCAATCTTAGAGAAGCACCACATGTCTGGTAACTGTGATCCCACAAAGAAGAAGAAATCCATTTGCCCTGTCAAGGGGTGCAAGGAGATTTTATCAATATCCAACACCAGCACATGTAAAACTTGCCACCTGAAGGTATGCCTCAAACACCGTTTTCCTTCTGATCATGCTTGTAGCAGAGGAGTTTCAGCTTCTTCATCTTCAGCTGCTAATGGTGTGTTGAAGAATTTTCTTAGCCGCTTTTGTTTCAAGAACAGAACAACAGAAAAGGCCTAG 618 0.4369 MLLESSFFIHCVLLNILRIYSSVFHETQNHIGVSMAPGGTETFPDLGKNCQHRDCNRLDFLPYICDGCQRVFCSEHRSYKSHACPKSDLSRKVIVCQTCSMSIETTGYVGQDEDAILEKHHMSGNCDPTKKKKSICPVKGCKEILSISNTSTCKTCHLKVCLKHRFPSDHACSRGVSASSSSAANGVLKNFLSRFCFKNRTTEKA 205
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu8g01008 205 Gene3D - 36 98 IPR035896 -
Vimu8g01008 205 ProSiteProfiles Zinc finger AN1-type profile. 44 92 IPR000058 GO:0008270
Vimu8g01008 205 SUPERFAMILY AN1-like Zinc finger 40 86 IPR035896 -
Vimu8g01008 205 SUPERFAMILY AN1-like Zinc finger 128 176 IPR035896 -
Vimu8g01008 205 Gene3D - 112 191 IPR035896 -
Vimu8g01008 205 Pfam AN1-like Zinc finger 136 173 IPR000058 GO:0008270
Vimu8g01008 205 Pfam AN1-like Zinc finger 50 87 IPR000058 GO:0008270
Vimu8g01008 205 ProSiteProfiles Zinc finger AN1-type profile. 130 180 IPR000058 GO:0008270
Vimu8g01008 205 PANTHER ARSENITE INDUCUBLE RNA ASSOCIATED PROTEIN AIP-1-RELATED 42 183 - -
Vimu8g01008 205 SMART AN1_Zf_4 136 177 IPR000058 GO:0008270
Vimu8g01008 205 SMART AN1_Zf_4 50 89 IPR000058 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu8g01008 Vimu-Chr8 17242005 17243112 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu8g01008 35 193 C2H2 Transcription Factor Family AT3G28210 59.259 5.09e-63 192