Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu8g01000 ATGGATTTGTTCCTTGTGAGTAACCTAAACTCTACTGCACTTGCTTTCTGCTCTCTAACATTACTGTTAGCTTTCTCGCTGTTTCTCTTTCGTCCCTCCAAAGATGGTAGTAATCTGCCCGAACCTCCAATGGCCTCAGGTGCATGGCCCATACTCGGCCATCTCATGCTTCTCGGGGCCTCACCAACACCCCACAAGACGTTGGCAGCCATGGCTGACAAATATGGACCCCTCTTCACCATCAAGCTCGGTTCTAGACGCGCTTTGGTTCTCAGCAACTGGAAAATGGCGAAGGAATGTTACACCACAAACGACGTCGTCGTCTCCTCTCGCTCCAAGCTCGTGGCCATCCAACACGTTGCGTACAACCAAGCAAGTTTTGGGTTCGCACCCTATGGTCCTTACTGGCGTGAGATACGGAAGATGGTGACCGCGTTCCTCTCCGACCGCAAAACGGAGCTTCTGAGCCGCGTTAGGGTTTCTGAGATTCGAAGTTCTGTTAAAGAGCTCTTTCATGTTTGGTCGGAGAAGAAAGGGAGTGATGAGTGTGTGGTGGTGGAGATGAAGCAGTGGTTCACAGAGTTGGTGTTCAATATAGTTTTCCAAACCATGGCTGGAAAGCGATTATTTGGTAAAACAGCAGTGGTTAGTGAGAAAGATGCAGAGAAGTGTGTGAAGGCTTTGAGGGAGTTCATGCAGATGTTGGGAGTGTGCACGGTGGCTGATGCTGTTCCTGTTCTGAGGTGGATGAATTTGGGAGTGAAAGCCATGAAAGAAACTGCCAAAGAATTGGATGTGATCTTAGATGAGTGGTTGGTGGAGCACTGCAAAAAGAGAACTTTATTTGGTGAAAAGGGTGTTGAAAGAGACGACCAAGACTTCATAGATACGATGCTTTCAGTTCTTGAAGGTGCCACCATCGATGGCTTCGATGCTGCTACTATAAACAAAGCCACAACATTGGCGTTGATCTTGGGTGCCACTGATACAAGCACAGTCACTCTTACATGGGTGATATGTTTCTTATTGAAAAATCCTCTTATATTAGAAAAGGTAAAAGAAGAGATGAATATTCAGATTGGGAAAGAGAGATTCATAAGTGAGTCAGATGTGAACAAGTTAGTGTATCTTCAAGCAGTAGTGAAAGAGACATTGAGGTTGTATCCACCAGGACCTCTCTCAGCACCTCGTGAATTCACACAAGATTGCATGTTAGGTAGCTATCACATCAAAAAGGGAACTCGATTAATCACAAACCTGTGGAAGATCCAAACTGATCCTAATATTTGGTTGGATCCATTGACGTTCAAACCAGAAAGATTTATTACTACTCACAGAGATGTTGATGTTAAGGGTCAAAATTTTGAATTGCTACCGTTTGGAAGTGGCAGAAGAATATGTCCAGGAATATCCTTTGGCCTTAACATGATTCATTTAACTTTAGCTAATTTTTTGCACTCTTTTGAAATATTTAATAAACCTAATGAAGCTATTGATATGAGAGAAGCCCTTGGAATGACTAACGAAAAAGCTACTCCACTTGAAATTCTTGTTAAACCACGTTTGTCTTTAGAGTATTATGAATCCATGTGA 1593 0.435 MDLFLVSNLNSTALAFCSLTLLLAFSLFLFRPSKDGSNLPEPPMASGAWPILGHLMLLGASPTPHKTLAAMADKYGPLFTIKLGSRRALVLSNWKMAKECYTTNDVVVSSRSKLVAIQHVAYNQASFGFAPYGPYWREIRKMVTAFLSDRKTELLSRVRVSEIRSSVKELFHVWSEKKGSDECVVVEMKQWFTELVFNIVFQTMAGKRLFGKTAVVSEKDAEKCVKALREFMQMLGVCTVADAVPVLRWMNLGVKAMKETAKELDVILDEWLVEHCKKRTLFGEKGVERDDQDFIDTMLSVLEGATIDGFDAATINKATTLALILGATDTSTVTLTWVICFLLKNPLILEKVKEEMNIQIGKERFISESDVNKLVYLQAVVKETLRLYPPGPLSAPREFTQDCMLGSYHIKKGTRLITNLWKIQTDPNIWLDPLTFKPERFITTHRDVDVKGQNFELLPFGSGRRICPGISFGLNMIHLTLANFLHSFEIFNKPNEAIDMREALGMTNEKATPLEILVKPRLSLEYYESM 530
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu8g01000 530 Pfam Cytochrome P450 44 503 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vimu8g01000 530 CDD CYP82 76 521 - -
Vimu8g01000 530 Gene3D Cytochrome P450 30 522 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vimu8g01000 530 FunFam Cytochrome P450 82C4 33 519 - -
Vimu8g01000 530 PRINTS P450 superfamily signature 379 390 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vimu8g01000 530 PRINTS P450 superfamily signature 458 467 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vimu8g01000 530 PRINTS P450 superfamily signature 326 343 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vimu8g01000 530 SUPERFAMILY Cytochrome P450 47 521 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vimu8g01000 530 PANTHER CYTOCHROME P450 82C3-RELATED 22 527 - -
Vimu8g01000 530 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 460 469 IPR017972 GO:0005506|GO:0016705
Vimu8g01000 530 PRINTS E-class P450 group I signature 335 361 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vimu8g01000 530 PRINTS E-class P450 group I signature 457 467 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vimu8g01000 530 PRINTS E-class P450 group I signature 72 91 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vimu8g01000 530 PRINTS E-class P450 group I signature 467 490 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vimu8g01000 530 PRINTS E-class P450 group I signature 378 396 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vimu8g01000 530 PRINTS E-class P450 group I signature 419 443 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vimu8g01000 530 PRINTS E-class P450 group I signature 96 117 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu8g01000 Vimu-Chr8 17143499 17145361 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu8g01000 43 527 Cytochrome P450 AT4G31940 47.273 3.14e-166 479
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu8g01000 - - pvu:PHAVU_004G021100g 864.374