Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu8g00973 ATGGAACAAGGCTACAGACAAAACCAAAGCATTCCCCAGAGAGCTTCCATCGGTGATGCCTTAAATTTTCTGAATAGAGCGAAAGATGTGTTTTGGGACCAAATGGAGAAGTATGACATGATGATTCAGATCCTGAAAGATTACAAGGATGAAAGGATTACCTGTGCTGTTGTGGCTGCAAGGATGAAGGAGTTACTGAGTGGGCACCCCACTTTGATTATGAGATTCAACAATTTCTTGCCAAAGGAGCTTGAGATCAAACTTAAGCACGAACCTCGTCAAGAAATAGTCCGTTTAGTTGACAACATAAAGGAACGATTCAAAAATGATCAGGATGCTTACGCATCATTCTTGGAGAGTATGAAATCCTACAAAGAAGATATGCGAAAGACCTCTTGTGATCTTCATAGGGAGATTGCTATCATTTTTAAGGACCATCAAGATCTGCTTGATGAGTTCACCAGATTAATCCCTAATTATGATGCAATTGGCGTTGAAGAGACTGTTCATGATGAAAAGGGAACACTGAGCATTCCCAACTGCAAGCGAGCATGTTTAGGTTTGGTTCTAATCTCCTTGATCGCTAACATCTTCCACCGACCCTATAACGTTTTTTGCATAAGAAAGTATTTAACTAAAAGGATTCTTGCCATTGGAGATGGATGGTTCTCTCAGAAGGAAACTTTCAGATGTGATCTTTGCCATAGATTTGCCGAAGAAAGTGTGGTAAAGCCTATGATGGGAGAGAAAATGAGTTTAGGGTTTCAAACAATTTGTGCAGTGGGAATAGGTTTGAGTGTGGGTCTTATGTTTTCATGGAAAGCAGCCATTGCAATGATAGTTGTTCAACTTGTTATCATTGTTTGCTTCTACAAAGGAGGTGTCTTCAAGATCATGAAGGTCCATGATGATTGA 915 0.4 MEQGYRQNQSIPQRASIGDALNFLNRAKDVFWDQMEKYDMMIQILKDYKDERITCAVVAARMKELLSGHPTLIMRFNNFLPKELEIKLKHEPRQEIVRLVDNIKERFKNDQDAYASFLESMKSYKEDMRKTSCDLHREIAIIFKDHQDLLDEFTRLIPNYDAIGVEETVHDEKGTLSIPNCKRACLGLVLISLIANIFHRPYNVFCIRKYLTKRILAIGDGWFSQKETFRCDLCHRFAEESVVKPMMGEKMSLGFQTICAVGIGLSVGLMFSWKAAIAMIVVQLVIIVCFYKGGVFKIMKVHDD 304
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu8g00973 304 ProSiteProfiles PAH domain profile. 11 83 IPR003822 GO:0006355
Vimu8g00973 304 Pfam Paired amphipathic helix repeat 112 154 IPR003822 GO:0006355
Vimu8g00973 304 Pfam Paired amphipathic helix repeat 36 80 IPR003822 GO:0006355
Vimu8g00973 304 SUPERFAMILY ABC transporter transmembrane region 184 291 IPR036640 GO:0005524|GO:0016020
Vimu8g00973 304 ProSiteProfiles PAH domain profile. 86 160 IPR003822 GO:0006355
Vimu8g00973 304 PANTHER SIN3B-RELATED 17 162 IPR039774 GO:0003714
Vimu8g00973 304 Gene3D ABC transporter type 1, transmembrane domain 159 302 IPR036640 GO:0005524|GO:0016020
Vimu8g00973 304 SUPERFAMILY PAH2 domain 10 82 IPR036600 GO:0006355
Vimu8g00973 304 FunFam Paired amphipathic helix protein Sin3 19 81 - -
Vimu8g00973 304 SUPERFAMILY PAH2 domain 96 158 IPR036600 GO:0006355
Vimu8g00973 304 Gene3D Paired amphipathic helix 19 81 IPR036600 GO:0006355
Vimu8g00973 304 Gene3D Paired amphipathic helix 97 158 IPR036600 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu8g00973 Vimu-Chr8 16895861 16898517 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu8g00973 16 91 WRKY Transcription Factor Family AT4G12020 42.105 6.30e-12 64.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Vimu8g00973 PAH 2.3e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu8g00973 K11644 - var:108345401 510.375