Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu8g00972 ATGGGTGGTGGCAGTGCTGATAGTGGTGATGCTGACCATAACAATTCTATTTCCATGGTTGTTAAGAACAAGAAGAGTGGCTCTATTCGGTCCATTTTTATGCATGCTGATGGCCTGGACATGTTTCTCATGATTTTCGGATTGATTGGAGCCATTGGTGATGGCTTAGGCACCCCTTTGGTGTTGTTTATCACCAGTAAAATCATGAACAATATTGGAAATTTTTCTGGTGGAATAGATAGCACTTTCCTCCACAGCATCAATAAGAATGCTTTGGTTTTGTTATACTTGGCTTGTGGGTCTTTTGTTGCTTGTTTTCTAGAGGGTTATTGTTGGACAAGAACCGGTGAAAGACAAGCTGCTAAAATGAGAGTGAGGTACCTCAAGGCAGTGTTGAGGCAAGAAGTCGCATACTTTGATTTGCATGTCAGTAGCACATCCGAGGTCATCACCAGTGTCTCTAATGACAGCCTCGTAATTCAGGATGTTCTTAGTGAGAAGGTTCCAAATTTTTTGATGAATGCCTCTATGTTTGTGGGGAGCTACATAGTGGGTTTTGCATTATTATGGAGATTGACCCTTGTGGGGTTCCCTTTTGTGGTTCTACTTGTGATCCCTGGTTTTATGTATGGGAGGACACTAATGGGGTTGGCCAGCAAGATGAGAGAAGAGTACGACAAGGCTGGTACAGTGGCAGAACAAGCAATATCTTCCATCAGAACAGTTTACTCCTTTGTGGGGGAAAGCAAAACCATAGATGCTTTCTCTGATGCTCTACAAGGTTCAGTAAAGTTAGGACTCAGACAAGGCTTAGCAAAAGGCATAGCTATCGGAAGCAATGGTGTTGTGTTTGCTATATGGGCTTTCATATCCTATTATGGTAGCAGAATGGTCATGTACCACGGTGCCAAAGGAGGAACTGTGTTTGCAGTTGGGGCAGCCATAGCACTTGGAGGATTGGCCTTAGGTGCTGGTTTGTCGAACGTGAAGTACTTGTCGGAGGCAAGCACGGCAGGAGAACGAATAATGGAAGTGATAAAAAGGGTTCCGAAGATCGATTCAGACAACATGGGAGGGGAGATTCTGGAGGATGTTTGTGGGGAAGTTGAGTTTGAGAATGTGATGTTTGTGTACCCTTCGAGGCCTGACAGTGTGATTCTGAAGGAGTTCAGCCTGAGGGTTCCTGCAGGGAAAACAGTGGCACTAGTTGGAGGAAGTGGGTCAGGAAAATCCACTGTGATATCTCTTCTGCAGAGATTCTATGACCCAGTTGAGGGAGAGATACGTGTTGATGGTGTGGCCATTCATAGGTTGCAACTGAAGTGGTTGAGGTCTCAAATGGGGTTGGTGAGTCAAGAACCTGCACTCTTTGCAACCACCATTAAAGAGAATATACTGTTTGGAAGAGAAGATGCAACTGAGGAAGAGGTTCTCCAAGCTGCAAAAGCTTCCAATGCTCATAATTTCATCTCACAGTTGCCACAAGGATATCATACTCAGGTGGGGGAGAGAGGAATTCAAATGTCAGGGGGACAAAAGCAAAGAATTGCTATAGCAAGAGCAATAATAAAGAAGCCACGAATTCTATTGTTAGATGAAGCAACGAGTGCCCTAGATTCTGAATCCGAAAGAGTTGTGCAAGAAGCATTGGACAAAGCAGCAGTGGGGCGCACCACGATCATCATTGCTCATCGATTATCCACCATAAGAAACGCAGATGTGATTGCTGTGGTGCAAAGTGGGAAGATCATGGAAATGGGGTCACACCATGAACTCATCCAAAACGACAATGGCCTCTACACCTCTCTAGTTCGTCTGCAACAGGCAAAAGACGAAAAAGAAGACACCCCTTTTCACCCTCTTCCTCCTCCTTCATCATTATTATCTTCATCAATATCAAACAAGGACAATATTCACAACACAAGCAGTCGTAGGTTGTCTCTTGTGAGTCGATCCAGTTCTGCCAACTCAATCCCTCGTGGTGATGATGTTGTTGAAGATGTTGTGGAAGAAGATATGAAGCTGCCACTTCCCTCCTTTCGAAGATTGCTGGCAATGAATATTCCTGAGTGGAAGCAAGCATGTATGGGATGTTTGAATGCAGTGTTGTTTGGTGCAATACAACCTGTGTATGCATTTTCAATGGGGTCGGTGATATCTGTTTACTTTCTCCCAGACCATGGTGAGATTAAAGAGAAAACCAGGATCTACTCCCTTTGTTTTCTAGGGTTGGCTGTGTTCTCCTTGGTGGTTAACATTCTCCAACACTATAACTTTGCTTACATGGGAGAGTACCTAACCAAAAGGATCAGAGAACGAATGCTTTCCAAGATACTCACTTTTGAAGTTGGATGGTTCGATCAAGATGAAAATTCTACAGGTGCTGTTTGTTCTAGACTTGCCAAAGAAGCCAATGTGGTAAGGTCTTTGGTGGGAGACAGAATGGCTCTAGTGGTGCAAACCATTTCTGCAGTGGTGATAGCTTTCACTATGGGCCTAGTCATTGCATGGAGGTTGGCCATTGTTATGATAGCAGTTCAACCGATCATCATAGCCTGCTTCTACACAAGGCGTGTCCTTCTCAAGAGCATGTCTAGCAAGGCCATCAAGGCGCAAGATGAAAGTAGCAAGATAGCTGCAGAAGCTGTTTCCAACCTCAGAACCATCACAGCATTTTCTTCCCAAGAGAGGATCCTGAAGATGCTTGAAAAGGCACAAGAGGGACCAAGTCATGAAAGCATTCGGCAGTCATGGTTTGCAGGTGTTGGTCTTGCCTGTTCCCAGAGCCTTACGTTTTGCACTTGGGCCTTGGACTTCTGGTATGGGGGAAAGCTTGTGTTCAAAGGGATCATCAGTGGCAAAGCATTGTTTGAGACCTTCATGATCTTAGTGAGCACAGGCAGGGTCATTGCAGATGCTGGAAGCATGACCAATGACCTTGCCAAAGGTTCTGATGCTGTGGGTTCAGTTTTTGCAATCCTAGATAGGTACACAAAAATTGAGCCTGATGATGAGACAGATGGACACAAGCCTGAAAAATTAACTGGGAAAATAGAGCTTCATGATGTCCATTTTGCATACCCAGCCAGGCCTAATGTGATGATTTTTCAAGGCTTCTCAATCAGAATAGATGCAGGCAAATCAACAGCATTGGTAGGGCAAAGTGGTTCTGGAAAATCAACAATAATAGGGCTAATAGAGAGATTCTATGACCCACTAAAAGGGATAGTGACCATAGATGGTAGAGACATAAAACAATATCACCTTAGGTCACTGAGGAAGCACATTGGTCTGGTGAGCCAAGAGCCAACATTGTTTGCTGGGAGCATAAGGGAAAATATTGCATATGGAGCATGTAACAAGGTTGATGAAAGTGAGATCATAGAAGCAGCAAGGGCTGCAAATGCTCATGACTTCATTGCAAGTCTGAAGGATGGATATGAAACATGGTGTGGAGATAGAGGAGTGCAACTCTCAGGGGGTCAGAAGCAAAGAATTGCAATAGCAAGAGCCATACTGAAGAACCCTGAAGTGCTGTTGCTGGATGAAGCCACCAGTGCTCTTGATAGCCAGTCAGAGAAGTTGGTTCAAGATGCTCTAGACAGGGTGATGGTAGGAAGAACCAGTGTGGTGGTGGCTCACAGGCTAAGCACAATACAGAACTGTGATCAAATTGCTGTGCTAGACAAGGGAAAAGTGGTGGAGAAAGGGACTCATTCATCTTTGTTGGGTCAGGGACCAAGTGGAGCTTATTACTCTTTGGTGAGTTTGCAAAGAAGACCAACAAAACATGAAGGTTAA 3801 0.4451 MGGGSADSGDADHNNSISMVVKNKKSGSIRSIFMHADGLDMFLMIFGLIGAIGDGLGTPLVLFITSKIMNNIGNFSGGIDSTFLHSINKNALVLLYLACGSFVACFLEGYCWTRTGERQAAKMRVRYLKAVLRQEVAYFDLHVSSTSEVITSVSNDSLVIQDVLSEKVPNFLMNASMFVGSYIVGFALLWRLTLVGFPFVVLLVIPGFMYGRTLMGLASKMREEYDKAGTVAEQAISSIRTVYSFVGESKTIDAFSDALQGSVKLGLRQGLAKGIAIGSNGVVFAIWAFISYYGSRMVMYHGAKGGTVFAVGAAIALGGLALGAGLSNVKYLSEASTAGERIMEVIKRVPKIDSDNMGGEILEDVCGEVEFENVMFVYPSRPDSVILKEFSLRVPAGKTVALVGGSGSGKSTVISLLQRFYDPVEGEIRVDGVAIHRLQLKWLRSQMGLVSQEPALFATTIKENILFGREDATEEEVLQAAKASNAHNFISQLPQGYHTQVGERGIQMSGGQKQRIAIARAIIKKPRILLLDEATSALDSESERVVQEALDKAAVGRTTIIIAHRLSTIRNADVIAVVQSGKIMEMGSHHELIQNDNGLYTSLVRLQQAKDEKEDTPFHPLPPPSSLLSSSISNKDNIHNTSSRRLSLVSRSSSANSIPRGDDVVEDVVEEDMKLPLPSFRRLLAMNIPEWKQACMGCLNAVLFGAIQPVYAFSMGSVISVYFLPDHGEIKEKTRIYSLCFLGLAVFSLVVNILQHYNFAYMGEYLTKRIRERMLSKILTFEVGWFDQDENSTGAVCSRLAKEANVVRSLVGDRMALVVQTISAVVIAFTMGLVIAWRLAIVMIAVQPIIIACFYTRRVLLKSMSSKAIKAQDESSKIAAEAVSNLRTITAFSSQERILKMLEKAQEGPSHESIRQSWFAGVGLACSQSLTFCTWALDFWYGGKLVFKGIISGKALFETFMILVSTGRVIADAGSMTNDLAKGSDAVGSVFAILDRYTKIEPDDETDGHKPEKLTGKIELHDVHFAYPARPNVMIFQGFSIRIDAGKSTALVGQSGSGKSTIIGLIERFYDPLKGIVTIDGRDIKQYHLRSLRKHIGLVSQEPTLFAGSIRENIAYGACNKVDESEIIEAARAANAHDFIASLKDGYETWCGDRGVQLSGGQKQRIAIARAILKNPEVLLLDEATSALDSQSEKLVQDALDRVMVGRTSVVVAHRLSTIQNCDQIAVLDKGKVVEKGTHSSLLGQGPSGAYYSLVSLQRRPTKHEG 1266
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu8g00972 1266 MobiDBLite consensus disorder prediction 611 634 - -
Vimu8g00972 1266 ProSitePatterns ABC transporters family signature. 1158 1172 IPR017871 GO:0005524|GO:0016887
Vimu8g00972 1266 CDD ABC_MTABC3_MDL1_MDL2 369 607 - -
Vimu8g00972 1266 PANTHER ABC TRANSPORTER B FAMILY 20 750 IPR039421 -
Vimu8g00972 1266 FunFam ABC transporter B family member 4 1008 1264 - -
Vimu8g00972 1266 FunFam Putative ABC transporter B family member 8 660 1005 - -
Vimu8g00972 1266 Gene3D ABC transporter type 1, transmembrane domain 93 991 IPR036640 GO:0005524|GO:0016020
Vimu8g00972 1266 CDD ABC_MTABC3_MDL1_MDL2 1018 1258 - -
Vimu8g00972 1266 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 45 334 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vimu8g00972 1266 FunFam ABC transporter B family member 4 359 614 - -
Vimu8g00972 1266 SUPERFAMILY ABC transporter transmembrane region 40 353 IPR036640 GO:0005524|GO:0016020
Vimu8g00972 1266 SUPERFAMILY ABC transporter transmembrane region 676 1001 IPR036640 GO:0005524|GO:0016020
Vimu8g00972 1266 Pfam ABC transporter 1038 1186 IPR003439 GO:0005524
Vimu8g00972 1266 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 369 605 IPR003439 GO:0005524
Vimu8g00972 1266 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1018 1255 IPR003439 GO:0005524
Vimu8g00972 1266 CDD ABC_6TM_Pgp_ABCB1_D2_like 684 1000 - -
Vimu8g00972 1266 ProSitePatterns ABC transporters family signature. 508 522 IPR017871 GO:0005524|GO:0016887
Vimu8g00972 1266 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1009 1258 IPR027417 -
Vimu8g00972 1266 CDD ABC_6TM_Pgp_ABCB1_D1_like 44 342 - -
Vimu8g00972 1266 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 362 607 IPR027417 -
Vimu8g00972 1266 SMART AAA_5 396 582 IPR003593 GO:0016887
Vimu8g00972 1266 SMART AAA_5 1045 1238 IPR003593 GO:0016887
Vimu8g00972 1266 Pfam ABC transporter transmembrane region 696 963 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vimu8g00972 1266 Pfam ABC transporter transmembrane region 44 311 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vimu8g00972 1266 Gene3D - 367 637 IPR027417 -
Vimu8g00972 1266 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 701 982 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vimu8g00972 1266 Pfam ABC transporter 387 536 IPR003439 GO:0005524
Vimu8g00972 1266 Gene3D - 1008 1265 IPR027417 -
Vimu8g00972 1266 FunFam ABC transporter B family member 1 31 365 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu8g00972 Vimu-Chr8 16880110 16886117 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu8g00972 18 1259 Calmodulin-binding Proteins AT2G36910 45.202 0.0 1072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu8g00972 K05658 - gmx:100807709 2129.75