Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu8g00962 GAACCCCTGGTGCATCGTGACTTGAAACCAACAAACATTCTTTTAGACAAGAACTATGTGAGCAAGATCAGTGATGTTGGTTTAGCACGACTAGTTCCTCCTTCAGTGGCTGATCAAACCACACAATATCTTTTAACTGGTGCAGCTGGAAAATTTTGTTATATCGATCCTGAGTATCAACAAACAGGATTGTTGGGTGTGAAATCAGACGTATATTCATTAGGAGTAGTGTTGCTACAAATCATCACAGGAAAATCTCCAATGGGGTTGTCATACTTGGTTAAGAAGGCTCTTCTGTCAAATACTTTAAGTGAGGTGCTTGATCCAAGTGTTACAGACTGGCCAATAGAAGCGACTTCATCATTCGCTAAGTTGGCCTTAAAGTGTTGCGAGTTGAGAAAACGTGATAGACCAGATCTTGGTACTGTTGTCTTGCCAGAGTTATATAGAATAAAGGTTGTGGGAGGATGA 471 0.4076 EPLVHRDLKPTNILLDKNYVSKISDVGLARLVPPSVADQTTQYLLTGAAGKFCYIDPEYQQTGLLGVKSDVYSLGVVLLQIITGKSPMGLSYLVKKALLSNTLSEVLDPSVTDWPIEATSSFAKLALKCCELRKRDRPDLGTVVLPELYRIKVVGG 156
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu8g00962 156 ProSiteProfiles Protein kinase domain profile. 1 149 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu8g00962 156 Gene3D Transferase(Phosphotransferase) domain 1 1 153 - -
Vimu8g00962 156 PANTHER OS02G0152300 PROTEIN 1 153 - -
Vimu8g00962 156 Pfam Protein kinase domain 3 139 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu8g00962 156 ProSitePatterns Serine/Threonine protein kinases active-site signature. 3 15 IPR008271 GO:0004672|GO:0006468
Vimu8g00962 156 SUPERFAMILY Protein kinase-like (PK-like) 3 144 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu8g00962 Vimu-Chr8 16763884 16764354 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu8g00962 1 155 Receptor kinase-like Gene Family AT5G12000 68.387 1.62e-73 229
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXb Vimu8g00962 Pkinase 6.3e-19 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu8g00962 - - var:108320196 281.567