Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu8g00939 ATGATGAGGGAGCTATGGAGTCAAATGGGATCATTAATGGCAACTGTGGTGTTCATGTACACAATTTTTGAGCGATTCTTCCCTTCTTCCTTTCGTGACCGTCTTCAGGCATATGCTCAAAAAGTGACAAACCATTTCAACCCTTATATCCAAATTACCTTTCCTGAGTTTTCAGGGGAAAGACTGAAGAAAAGTGAAGCATACAATGCCATCCAAACCTACCTCAGTGCAAACTCCTCTCAGAGAGCCAAAAGACTCAAAGCCGAAGTGGTGAAGGATAGTCAAACCCCACTGGTCCTCAGCATGGATGACAACGAAGAGATCACTGATGAATTCCAAGGCGTCAAAGTGTGGTGGAGTGCAAACAAAGTAAGCTCCAATCCACAGAGGTACAACCCTTTCTCTTACTACGGTTCCTCTGATGAGAAAAGGTTCTACAAGCTCACTTTCCACAGAAGCCACCGTGACATCATCACCATGTCTTACATCAAGCATGTGTTGGAAGAGGGGAAGGAAATTGAGTTGACAAACAGGCAGTTGAAGCTTTACACCAACAATCCCAGCAGTGGTTGGTATGGTTACAAGCAGTCAAAGTGGAGTCACATAGTGTTTGAGCACCCTGCCTCTTTTGAAACACTGGCTATGGATCAGAAAAGGAAGGAAGATATCCTGAAAGACCTTGCTAAATTTAAGAAGGGAAAGGAGTATTATTCAAAGATAGGTAAGGCTTGGAAAAGAGGGTATCTTTTGTATGGCCCTCCAGGGACTGGGAAGTCTACCATGATAGCTGCTATTGCTAAGTTCATGAATTATGATGTATATGATCTTGAGTTGACAGCAGTGAAGGACAACACTGAGTTGAGAAAGTTGTTGATTGAAACTCCAAGTAAGTCTATTACGGTGATTGAGGACATTGATTGTTCTCTTGATCTTACTGGGCAGAGGAAGAAGAAAAAGGAAGAGGTTGAGAATGAAGAACCGAAAGATCCTATGAGGAAGAATGAAGAGGAGAGTAGCAAGAGCAGCAAGGTAACTCTATCTGGGTTGCTGAATTTTATTGATGGGATTTGGTCAGCTTGTGGAGGTGAGAGGATCATCATTTTCACCACAAATTATGTGGAGAAACTTGACCCTGCTCTCATCAGGAGAGGGAGGATGGATAAGCACATTGAGATGTCCTATTGTTGTTTTGATGCATTCAAGGTGCTGGCCAAGAACTACTTGGATATTGAGTCTCACCTTTTGTTCGATAGAATTGGGAGATTGTTGAAAGAGACAGAGATGTCGCCTGCTGATGTTGCTGAGAATCTAATGCCAAAGTCTGAGGATGAAGATGTGGAGACTTGCCTGGAGAATTTGATTAAGGCTCTTGAGAAGAACAGGGAAGAAAATGCAAAGAAAAAGGCAGAAGAAGAAGCACAGAAAAAGTTGGAGGAGGAGAAAGCCAAAGAAGAATCTACTCAGAATAAGGAAATAAACAAAGAAAAAACTAGGGAGAATGGGGTGAAGGAAAATGGGTTTCGTTGA 1527 0.4244 MMRELWSQMGSLMATVVFMYTIFERFFPSSFRDRLQAYAQKVTNHFNPYIQITFPEFSGERLKKSEAYNAIQTYLSANSSQRAKRLKAEVVKDSQTPLVLSMDDNEEITDEFQGVKVWWSANKVSSNPQRYNPFSYYGSSDEKRFYKLTFHRSHRDIITMSYIKHVLEEGKEIELTNRQLKLYTNNPSSGWYGYKQSKWSHIVFEHPASFETLAMDQKRKEDILKDLAKFKKGKEYYSKIGKAWKRGYLLYGPPGTGKSTMIAAIAKFMNYDVYDLELTAVKDNTELRKLLIETPSKSITVIEDIDCSLDLTGQRKKKKEEVENEEPKDPMRKNEEESSKSSKVTLSGLLNFIDGIWSACGGERIIIFTTNYVEKLDPALIRRGRMDKHIEMSYCCFDAFKVLAKNYLDIESHLLFDRIGRLLKETEMSPADVAENLMPKSEDEDVETCLENLIKALEKNREENAKKKAEEEAQKKLEEEKAKEESTQNKEINKEKTRENGVKENGFR 508
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu8g00939 508 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 99 461 IPR027417 -
Vimu8g00939 508 MobiDBLite consensus disorder prediction 461 508 - -
Vimu8g00939 508 MobiDBLite consensus disorder prediction 316 340 - -
Vimu8g00939 508 Gene3D - 391 459 - -
Vimu8g00939 508 FunFam AAA-ATPase ASD, mitochondrial 200 390 - -
Vimu8g00939 508 Gene3D - 198 390 IPR027417 -
Vimu8g00939 508 Coils Coil 450 495 - -
Vimu8g00939 508 SMART AAA_5 244 396 IPR003593 GO:0016887
Vimu8g00939 508 PANTHER BCS1 AAA-TYPE ATPASE 8 465 - -
Vimu8g00939 508 Pfam ATPase family associated with various cellular activities (AAA) 249 393 IPR003959 GO:0005524|GO:0016887
Vimu8g00939 508 CDD RecA-like_BCS1 223 392 - -
Vimu8g00939 508 ProSitePatterns AAA-protein family signature. 364 383 IPR003960 GO:0005524|GO:0016887
Vimu8g00939 508 Pfam Domain associated at C-terminal with AAA 27 121 IPR025753 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu8g00939 Vimu-Chr8 16592224 16593750 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu8g00939 223 392 Calmodulin-binding Proteins AT3G56690 26.404 1.47e-09 58.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu8g00939 - - gmx:100787917 843.573