Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu8g00926 ATGGGGTTTGGGAGCAATGCAGTTCAAGCAGGGAGTTTGGATGTGGACAAGTCAAAGGGCAGGAAGAACAAGGAAGGTGGTGTGAAGGAGAAAAAATGGGGGTTTAGATTTAGCATCTTTGGGAGTTGCATACCTTCAAAATCAAAAGTTGATAGCACAAAAGTTAGTGGCACTAGTGCCCATAATAATGGTGAAAATGTTAAGTCAGTGGTAACTGAATCAGAGGAAAACAAATCTGCATCTGATAGAATCACAAAGGAAACAGTTGCTCCTCCGGAGTCCTCTACCACAACCAGTGATGCAGAAAGTAACCCTTCAACTCCAATATTCAGTGAGGAGTTGAAGGTCGCTTCTTGCCTGAGAAAATTCACATTCAACGGACTTAAGGTGGCCACAAGGAATTTTAGACCAGAGAGTCTTCTTGGTGAAGGAGGGTTTGGTTGTGTCTTCAAGGGTTGGATTGAAGAGAATGGAACTGCACCTGTGAAACCAGGTACCGGGCTTACGGTTGCGGTCAAGACCCTCAACCACAATGGACATCAAGGTCACAAAGAGTGGCTTGCATGTGCTCTGTGCATGATTGTTTTTCTGGTAACAACCATTTGTTTTGTTGAAGGACCCCTGCCTCTTCCTTGGTCTATCAGAATGAAAATTGCACTTGGTGCTGCAAAGGGTCTTGCTTTTCTCCACGAAGAGGCTCAAAGACCCATAATATATCGTGATTTCAAAACATCTAATATACTATTAGATGCGGAATACAATGCCAAGCTCTCTGATTTTGGACTTGCCAAAGATGGTCCTGAAGGGGAAAAGACACATGTGTCAACAAGAGTTATGGGAACGTATGGTTATGCGGCCCCCGAGTATGTGATGACTGGACATTTGACATCAAAAAGTGATGTCTACAGCTTTGGAGTAGTACTACTTGAAATGCTCACCGGCAGGCGATCCATTGACAAGAAGAGACCAAATGGGGAACACAATCTGGTGGAGTGGGCAAGACCTGTTCTTGGAGACCGGAGGATGTTCTACCGGATAATCGACCCCCGCCTCGAAGGCCACTTCTCGGTTAAAGGGGTACAGAAAGCTGTGCAGCTTGCAGCTCAATGCCTTAGCCGTGATCCAAAATCCAGACCCTTGATGAGTGAAGTTGTTCAAGCTTTGAAGCCTTTACCAAGCCTCAAGGACATGGCTATCTCATCTTATCACTTCCAGATTGCGCGAGTAGACCGAACCATGTCGATGCCGAATCATAAAAATGGCATCAGAACACAGATAGTATCTGTGTCAAGGAAGGGTCAACCTGTAAGGACATTGTCTAGCTCAAATGTTCCACATGGTTCTCCATACATTCGATATACCAAGTCTCCAAAACCTGCTGGGTAA 1386 0.4517 MGFGSNAVQAGSLDVDKSKGRKNKEGGVKEKKWGFRFSIFGSCIPSKSKVDSTKVSGTSAHNNGENVKSVVTESEENKSASDRITKETVAPPESSTTTSDAESNPSTPIFSEELKVASCLRKFTFNGLKVATRNFRPESLLGEGGFGCVFKGWIEENGTAPVKPGTGLTVAVKTLNHNGHQGHKEWLACALCMIVFLVTTICFVEGPLPLPWSIRMKIALGAAKGLAFLHEEAQRPIIYRDFKTSNILLDAEYNAKLSDFGLAKDGPEGEKTHVSTRVMGTYGYAAPEYVMTGHLTSKSDVYSFGVVLLEMLTGRRSIDKKRPNGEHNLVEWARPVLGDRRMFYRIIDPRLEGHFSVKGVQKAVQLAAQCLSRDPKSRPLMSEVVQALKPLPSLKDMAISSYHFQIARVDRTMSMPNHKNGIRTQIVSVSRKGQPVRTLSSSNVPHGSPYIRYTKSPKPAG 461
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu8g00926 461 MobiDBLite consensus disorder prediction 43 107 - -
Vimu8g00926 461 MobiDBLite consensus disorder prediction 429 449 - -
Vimu8g00926 461 Gene3D Phosphorylase Kinase; domain 1 119 196 - -
Vimu8g00926 461 FunFam Probable serine/threonine-protein kinase PBL8 198 407 - -
Vimu8g00926 461 SUPERFAMILY Protein kinase-like (PK-like) 120 403 IPR011009 -
Vimu8g00926 461 ProSitePatterns Serine/Threonine protein kinases active-site signature. 237 249 IPR008271 GO:0004672|GO:0006468
Vimu8g00926 461 MobiDBLite consensus disorder prediction 45 70 - -
Vimu8g00926 461 PANTHER OS01G0588500 PROTEIN-RELATED 87 391 - -
Vimu8g00926 461 MobiDBLite consensus disorder prediction 88 107 - -
Vimu8g00926 461 ProSitePatterns Protein kinases ATP-binding region signature. 141 173 IPR017441 GO:0005524
Vimu8g00926 461 Pfam Protein kinase domain 217 386 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu8g00926 461 ProSiteProfiles Protein kinase domain profile. 135 394 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu8g00926 461 Gene3D Transferase(Phosphotransferase) domain 1 203 408 - -
Vimu8g00926 461 MobiDBLite consensus disorder prediction 429 461 - -
Vimu8g00926 461 MobiDBLite consensus disorder prediction 1 27 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu8g00926 Vimu-Chr8 16434597 16437544 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu8g00926 42 404 Glycoside Hydrolase AT3G07070 43.766 5.50e-95 291
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Vimu8g00926 Pkinase 1.2e-29 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu8g00926 - - gmx:100499647 775.393