Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu8g00923 ATGTCCGACGGCCATCTCTTCAACAACATCACCCTCGGAGGCCGCGGAGGCACTCAATGGCGATGTAACACTTCTTTTTGTGTAATTGTGTTGCAGAATCCTGGACAGATAAGGATTTATGCTGGAGGAATTATATGGAAGAGACAGGGTGGCGGTAAATTAATTGAAGTTGATAAATCTGACATAATGGGGGTGACATGGATGAAGGTTCCAAGGACTAACCAACTTGGGGTTCAAATCAAAGATGGGTTGTACTACAAGTTCACAGGATTTCGCGATCAGGATGTTGTAAGTTTGACCAATTTTTTTCAAAACACCTGTGGAATATCAGTAGAGGAGAAACAGCTCTCTGTTAGCGGACGTAATTGGGGAGAAGTTGATCTAAATGGAAATATGCTGGCTTTTATGGTTGGTTCAAAGCAAGCCTTTGAAGTGTCTTTAGCAGACGTCTCTCAAACACAGCTTCAAGGGAAGAATGATGTGATCTTGGAGTTTCACGTGGATGACACAACTGGAGCTAATGAGAAAGATTCGTTGATGGAGATAAGTTTCCATATACCGAATTCCAACACCCAGTTTGTTGGTGATGAAAATCGTCCTCCTGCTCAGGTTTTCCGTGACAAAATAATGTCTATGGCTGATGTTGGTGCTGGAGGTGAAGATGCTGTTGTTACCTTTGAGGGTATTGCAATCCTTACACCAAGGGGACGATACAGTGTTGAGTTACACATGTCATTTTTGCGGCTTCAGGGACAAGCTAATGATTTCAAAATTCAGTATAGCAGTGTGGTTCGCCTTTTTTTGCTTCCTAAGTCTAATCAACCACATACCTTCGTTATCATTAGCCTTGACCCCCCTATTCGGAAGGGACAAACTTTGTACCCTCATATTGTGATGCAGTTTGAAACTGATTATGTTGTTCAAAGTGAACTGGCAATAACTGAAGATCTTTATAACACAAAGTATAAGGATAAATTGGAGCTGTCTTATAAGGGACTTATTCATGAAGTATTCACCACAATATTACGAGGGTTGTCAGGTGCCAAAGTGACTAAGCCTGGAAAATTTAGGAGTTGTCAAGATGGTTATGCAGTGAAATCATCTTTGAAAGCTGAAGATGGAATTCTGTACCCTCTTGAGAAGAGCTTCTTCTTTCTGCCTAAACCTCCCACTCTAATTCTTCATGAAGAGATTGACTATGTGGAGTTTGAGAGGCATGCTGCTGGTGGTTCCAATATGCATTATTTCGACCTTCTTATCAGACTGAAATCTGAACAAGAGCATCTATTCCGCAATATTCAGAGAAACGAGTACCACAATCTGTATGAATTTATCAGTTCAAAGGGCTTGAAAATTATGAATCTGGGAGATGCCCAACCCACTGTTGGTATTAAGAAGGTTCTTGAGAATGATGATGATGATGCTGTGGATCCACATCTTGAGCGTATTAAAAATGAAGCTGGTGGAGATGAAAGTGACGAGGAGGATTCGGATTTTGTTGCTGACAAGGATGATGAAGGTTCTCCTACCGATGATTCTGGGGCAGATGATTCCGATGATAGTGATAGTGGTGATGAGAAAGAGGCAAGTGGCTCCTGTGACACCTTAATTGTGACCAATTTTCAGAAGCCTGTAAAAAAGGAATCAAAGAAGGACCTGCCTTCTAAGGCGACTACTTCAAAAAAGAAATCTAAAGATGATGATGATGGAAAGAAGAAAAAACAGAAGAAGAAAAAGGACCCGAATGCACCCAAGAGGGCAATGTCCGGTTTCATGTTCTTTTCTAAATTGGAAAGAGAGAATCTAAAGAAAACTAATCCTGGAATTTCATTTACGGACGTGGGAAGAGTACTTGGAGAGAAATGGAAAAAGATGTCAGCGGATGAGAAGGAACCATACGAGGCAAAAGCACGCGAAGATAAAAAACGTTACAAGGATGAGATCAGTGGCTACAAGAATCCCCAACCTATGAATATTGATTCTGGAAATGACTCTGACAGTTCTTAA 2007 0.4106 MSDGHLFNNITLGGRGGTQWRCNTSFCVIVLQNPGQIRIYAGGIIWKRQGGGKLIEVDKSDIMGVTWMKVPRTNQLGVQIKDGLYYKFTGFRDQDVVSLTNFFQNTCGISVEEKQLSVSGRNWGEVDLNGNMLAFMVGSKQAFEVSLADVSQTQLQGKNDVILEFHVDDTTGANEKDSLMEISFHIPNSNTQFVGDENRPPAQVFRDKIMSMADVGAGGEDAVVTFEGIAILTPRGRYSVELHMSFLRLQGQANDFKIQYSSVVRLFLLPKSNQPHTFVIISLDPPIRKGQTLYPHIVMQFETDYVVQSELAITEDLYNTKYKDKLELSYKGLIHEVFTTILRGLSGAKVTKPGKFRSCQDGYAVKSSLKAEDGILYPLEKSFFFLPKPPTLILHEEIDYVEFERHAAGGSNMHYFDLLIRLKSEQEHLFRNIQRNEYHNLYEFISSKGLKIMNLGDAQPTVGIKKVLENDDDDAVDPHLERIKNEAGGDESDEEDSDFVADKDDEGSPTDDSGADDSDDSDSGDEKEASGSCDTLIVTNFQKPVKKESKKDLPSKATTSKKKSKDDDDGKKKKQKKKKDPNAPKRAMSGFMFFSKLERENLKKTNPGISFTDVGRVLGEKWKKMSADEKEPYEAKAREDKKRYKDEISGYKNPQPMNIDSGNDSDSS 668
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu8g00923 668 Pfam Histone chaperone Rttp106-like 364 453 IPR013719 -
Vimu8g00923 668 Gene3D - 353 461 IPR011993 -
Vimu8g00923 668 SMART hmgende2 583 653 IPR009071 -
Vimu8g00923 668 FunFam FACT complex subunit SSRP1 110 193 - -
Vimu8g00923 668 FunFam Fact complex subunit ssrp1 213 352 - -
Vimu8g00923 668 SUPERFAMILY PH domain-like 220 454 - -
Vimu8g00923 668 FunFam FACT complex subunit SSRP1 568 661 - -
Vimu8g00923 668 PANTHER FACT COMPLEX SUBUNIT SSRP1 7 637 - -
Vimu8g00923 668 MobiDBLite consensus disorder prediction 509 524 - -
Vimu8g00923 668 MobiDBLite consensus disorder prediction 624 668 - -
Vimu8g00923 668 CDD PH1_SSRP1-like 221 354 - -
Vimu8g00923 668 MobiDBLite consensus disorder prediction 482 592 - -
Vimu8g00923 668 MobiDBLite consensus disorder prediction 624 649 - -
Vimu8g00923 668 MobiDBLite consensus disorder prediction 654 668 - -
Vimu8g00923 668 PRINTS Structure-specific recognition protein signature 278 294 IPR000969 GO:0003677|GO:0005634
Vimu8g00923 668 PRINTS Structure-specific recognition protein signature 343 356 IPR000969 GO:0003677|GO:0005634
Vimu8g00923 668 PRINTS Structure-specific recognition protein signature 414 430 IPR000969 GO:0003677|GO:0005634
Vimu8g00923 668 PRINTS Structure-specific recognition protein signature 370 388 IPR000969 GO:0003677|GO:0005634
Vimu8g00923 668 PRINTS Structure-specific recognition protein signature 233 249 IPR000969 GO:0003677|GO:0005634
Vimu8g00923 668 PRINTS Structure-specific recognition protein signature 430 448 IPR000969 GO:0003677|GO:0005634
Vimu8g00923 668 PRINTS Structure-specific recognition protein signature 388 405 IPR000969 GO:0003677|GO:0005634
Vimu8g00923 668 PRINTS Structure-specific recognition protein signature 255 271 IPR000969 GO:0003677|GO:0005634
Vimu8g00923 668 Pfam POB3-like N-terminal PH domain 32 113 IPR035417 -
Vimu8g00923 668 Gene3D - 19 106 IPR011993 -
Vimu8g00923 668 Gene3D - 213 352 - -
Vimu8g00923 668 FunFam FACT complex subunit SSRP1 353 461 - -
Vimu8g00923 668 Pfam Structure-specific recognition protein (SSRP1) 120 188 IPR024954 -
Vimu8g00923 668 FunFam FACT complex subunit SSRP1 1 107 - -
Vimu8g00923 668 SUPERFAMILY HMG-box 571 653 IPR036910 -
Vimu8g00923 668 MobiDBLite consensus disorder prediction 544 575 - -
Vimu8g00923 668 CDD PH2_SSRP1-like 356 455 - -
Vimu8g00923 668 Gene3D High mobility group box domain 567 662 IPR036910 -
Vimu8g00923 668 CDD HMG-box_AtSSRP1 581 655 - -
Vimu8g00923 668 Gene3D - 109 193 IPR038167 -
Vimu8g00923 668 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 584 652 IPR009071 -
Vimu8g00923 668 SMART Rtt106_2 362 455 IPR013719 -
Vimu8g00923 668 Pfam HMG (high mobility group) box 584 652 IPR009071 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu8g00923 Vimu-Chr8 16407340 16413074 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu8g00923 580 652 ARID Transcription Factor Family AT1G04880 42.466 8.84e-11 62.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR HMG Vimu8g00923 Rtt106 3.6e-20 CL0266
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu8g00923 K09272 - gmx:100805034 1179.85