Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu8g00920 ATGGGAAGAAGTGATGCAAAGGTTGTCTTGACCCTGTTGGTCACTTTGGCCATCACCATCCCATGCCTTGAGGCTGGCATTGCTAAATACGACGACTTTCTGAAAGCTCAAGCTAAAGAAGCCCGTGAAATCGCTATCGAGTCCTATGTGCCAACTCCTGAATTGGTCACCGGTGAGCTCAATCACCATGTTCATCTTGCCATTAAAAACAGCACAAGGAGGGGACTAAATGAGGCCAATAACCCTGTTGGAGGGCGCTGTGACAGCACCAACCCCATTGACAATTGCTGGAGGTGCAACAAAGACTGGGCTAAAGACAGGTACCGCTTGGCCAGATGCGGAAAAGGGTTTGGAAGACGCGCTGTGGGAGGGCTCGGTGGACCCATTTACGTTGTCACCGATAACTCCGACGAGGACATGGTCAACCCTAAGCCCGGAACCCTCCGATATGCCGTCACCCAAAAGGGTCCACTTTGGATCATCTTCGAACGCAGCATGATCATCACTCTGAAGCAGGAGCTTCTCATTTCCTCCGACAAGACAATCGACGGTCGTGGTGCCAACGTTCAGATCAAGGACGGTGGTGGCCTCACCATTCAGTTCGTGAACAACGTCATCATCCATGGAATTCGTGTTAAGAACATTGTGCCTAAGGAGGGTGGCATGATCAGGGACTCCTACAACCACGTTGGACTGAGAACGAGGAGTGATGGTGATGCCATCTCCCTCTTCGGAGCCTCCAACGTATGGATCGATCATGTTTCTCTCTCTAATGCTGCCGATGGACTGATCGATGTGATCCAAGGCTCCACAGCCATCACCATCTCCAACTGCCACATGACCAGACACAACGATGTCATGTTGTTTGGTGCGACTGACTCGTACACTGAGGACAAGATCATGCAGATAACAGTGGCATTCAACCATTTCGGTCAGGGACTGATCCAGAGGATGCCAAGGTGCAGATGGGGATTCTTCCACGTTCTTAACAACGATTACACTCACTGGATGATGTATGCCATTGGTGGAAGCGCAGGGCCAACTATTCTTAGCCAAGGAAACCGTTTCATTGCTCCCAACAACGTCGCTGCAAAGGAGATCACACACAGAGATTATGCTACACCAGACGTCTGGAAAAACTGGCAGTGGCAATCCGACATGGACCTTCTGATGAACGGTGCCACTTTCAACACTTCAGGTGCTCCCATTAAGATGACACACAAGAAGGGTCTGATCATGAAGCCAAGAGATGGAACTCATGTCAGCAGACTCACACGCCATGCTGGCGCTCTTAATTGCTTTGTTGGCTTGCCTTGCTAG 1320 0.5053 MGRSDAKVVLTLLVTLAITIPCLEAGIAKYDDFLKAQAKEAREIAIESYVPTPELVTGELNHHVHLAIKNSTRRGLNEANNPVGGRCDSTNPIDNCWRCNKDWAKDRYRLARCGKGFGRRAVGGLGGPIYVVTDNSDEDMVNPKPGTLRYAVTQKGPLWIIFERSMIITLKQELLISSDKTIDGRGANVQIKDGGGLTIQFVNNVIIHGIRVKNIVPKEGGMIRDSYNHVGLRTRSDGDAISLFGASNVWIDHVSLSNAADGLIDVIQGSTAITISNCHMTRHNDVMLFGATDSYTEDKIMQITVAFNHFGQGLIQRMPRCRWGFFHVLNNDYTHWMMYAIGGSAGPTILSQGNRFIAPNNVAAKEITHRDYATPDVWKNWQWQSDMDLLMNGATFNTSGAPIKMTHKKGLIMKPRDGTHVSRLTRHAGALNCFVGLPC 439
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu8g00920 439 SUPERFAMILY Pectin lyase-like 91 430 IPR011050 -
Vimu8g00920 439 Pfam Pectate lyase 172 356 IPR002022 -
Vimu8g00920 439 PANTHER PECTATE LYASE 18-RELATED 42 436 IPR045032 GO:0030570
Vimu8g00920 439 SMART amb_all 165 362 IPR002022 -
Vimu8g00920 439 PRINTS Pollen allergen Amb family signature 173 189 IPR018082 -
Vimu8g00920 439 PRINTS Pollen allergen Amb family signature 317 336 IPR018082 -
Vimu8g00920 439 PRINTS Pollen allergen Amb family signature 237 258 IPR018082 -
Vimu8g00920 439 PRINTS Pollen allergen Amb family signature 410 433 IPR018082 -
Vimu8g00920 439 PRINTS Pollen allergen Amb family signature 339 358 IPR018082 -
Vimu8g00920 439 PRINTS Pollen allergen Amb family signature 381 405 IPR018082 -
Vimu8g00920 439 PRINTS Pollen allergen Amb family signature 113 130 IPR018082 -
Vimu8g00920 439 PRINTS Pollen allergen Amb family signature 137 162 IPR018082 -
Vimu8g00920 439 Pfam Pectate lyase, N terminus 27 76 IPR007524 GO:0030570
Vimu8g00920 439 Gene3D - 90 432 IPR012334 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu8g00920 Vimu-Chr8 16392561 16394228 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu8g00920 16 439 Polysaccharide Lyase AT1G14420 56.818 7.52e-179 506
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu8g00920 K01728 - gmx:100785801 735.717