Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu8g00917 ATGGGAGGAAGTGATGCAAAGGTTGTCTTGACCCTGTTGGTCACTCTGGCCATCACCATCCCATGCCTTGAGGCTGGCATTGCTAAATACGACGACTTTCTCAAAGCTCAAGCTAAAGAAGCCCACGAAATCGCTATCGAGTCCTATGTGCCAACTCCTGAATTGGTCACCGGTGAGCTCAATCACCATGTTCATCTTGCCATCAAAAACAGCACAAGGAGGGGACTGAATGAGGCCAAGAACCCCCCTATTGGAGGGCGCTGTGACAGCACCAATCCCATTGACAATTGCTGGAGGTGCAACAAAGACTGGGCTAAAGACAGGTACCGTTTGGCCAGATGCGGAAAAGGGTTCGGAAGACGCGCTGTGGGAGGGCTCGGTGGACCCATTTACGTTGTCACCGATAACTCCGACGAGGACATGGTCAACCCTAAGCCAGGAACCCTCCGATATGCCGTCACCCAAAAGGGTCCACTTTGGATCATCTTCGAACGCAGCATGATCATCACTCTGAAGCAGGAGCTTCTCATTTCCTCCGATAAGACCATCGACGGTCGTGGTGCCAACGTTCAGATCAGGGACGGTGGTGGCCTCACCATTCAGTTCGTGAACAACGTCATCATCCACGGCATTCGCGTTAAGAACATTGTGCCTAAGGAGGGTGGCATGATCAGGGACTCCTACAACCACGTTGGACTGAGAACGAGGAGTGATGGTGATGCCATCTCCCTCTTCGGAGCCTCCAACGTGTGGATCGATCATGTTTCTCTTTCTAACGCTGCCGATGGACTGATCGATGTGATCCAAGGCTCCACAGCCATCACCATCTCCAACTGCCACATGACCAGACACAACGATGTGATGTTGTTTGGTGCGACTGACTCGTACACTGAGGACAAGATCATGCAGATAACAGTGGCATTCAACCATTTCGGGCAGGGACTGATCCAGAGGATGCCAAGGTGCAGATGGGGATTCTTCCACGTTCTTAACAATGATTACACTCACTGGATGATGTACGCCATTGGTGGAAGCGCAGGACCAACTATTCTTAGCCAAGGAAACCGTTTCATTGCTCCCAACAACGACGCTGCAAAGGAGATCACACACAGAGATTATGCTACACCAGACGTCTGGAAGAACTGGCAATGGCAATCCGACATGGACCTTCTGATGAACGGTGCCACTTTCAACACTTCAGGTGCTCCCATCAAGATGACACACAAGAAGGGTCTGATCATGAAGCCAAGAGATGGAACTCATGTCAGCAGACTCACACGCCATGCTGGCGCTCTCAACTGCTTTGTTGGCTTGCCTTGCTAG 1323 0.514 MGGSDAKVVLTLLVTLAITIPCLEAGIAKYDDFLKAQAKEAHEIAIESYVPTPELVTGELNHHVHLAIKNSTRRGLNEAKNPPIGGRCDSTNPIDNCWRCNKDWAKDRYRLARCGKGFGRRAVGGLGGPIYVVTDNSDEDMVNPKPGTLRYAVTQKGPLWIIFERSMIITLKQELLISSDKTIDGRGANVQIRDGGGLTIQFVNNVIIHGIRVKNIVPKEGGMIRDSYNHVGLRTRSDGDAISLFGASNVWIDHVSLSNAADGLIDVIQGSTAITISNCHMTRHNDVMLFGATDSYTEDKIMQITVAFNHFGQGLIQRMPRCRWGFFHVLNNDYTHWMMYAIGGSAGPTILSQGNRFIAPNNDAAKEITHRDYATPDVWKNWQWQSDMDLLMNGATFNTSGAPIKMTHKKGLIMKPRDGTHVSRLTRHAGALNCFVGLPC 440
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu8g00917 440 Pfam Pectate lyase 173 357 IPR002022 -
Vimu8g00917 440 Gene3D - 91 433 IPR012334 -
Vimu8g00917 440 PRINTS Pollen allergen Amb family signature 382 406 IPR018082 -
Vimu8g00917 440 PRINTS Pollen allergen Amb family signature 411 434 IPR018082 -
Vimu8g00917 440 PRINTS Pollen allergen Amb family signature 238 259 IPR018082 -
Vimu8g00917 440 PRINTS Pollen allergen Amb family signature 114 131 IPR018082 -
Vimu8g00917 440 PRINTS Pollen allergen Amb family signature 138 163 IPR018082 -
Vimu8g00917 440 PRINTS Pollen allergen Amb family signature 174 190 IPR018082 -
Vimu8g00917 440 PRINTS Pollen allergen Amb family signature 340 359 IPR018082 -
Vimu8g00917 440 PRINTS Pollen allergen Amb family signature 318 337 IPR018082 -
Vimu8g00917 440 SMART amb_all 166 363 IPR002022 -
Vimu8g00917 440 SUPERFAMILY Pectin lyase-like 92 431 IPR011050 -
Vimu8g00917 440 PANTHER PECTATE LYASE 18-RELATED 43 437 IPR045032 GO:0030570
Vimu8g00917 440 Pfam Pectate lyase, N terminus 27 76 IPR007524 GO:0030570
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu8g00917 Vimu-Chr8 16368938 16370260 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu8g00917 16 440 Polysaccharide Lyase AT1G14420 57.045 1.97e-179 507
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu8g00917 K01728 - gmx:100810615 744.191