Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu8g00906 ATGACGGACGTGGACGGACGTCCCGCAGCAGCAAGAGCGCGGTTTAGCACAAACCGATTCTGTGTTGTTAATTACCTGGCATGTCTCTTCTTAGTTTTCATCATTATAAGAATTTTGTTCTTAAATTTGTATTTGTTGAATGTTTTAGGGGAAATGGGGAGCATTTCTGGTGTTAGGGTTGGTTCTTCAATTGGGGGCAAATCCAAAGGAGGGAGAAAGAACAAAGATGTTGTTCAAAGTAGTAGTGGAGAAGGTTCAAGATTTTGGAAGAAATTGAGAACTTTTCTAGGTTGCATGTTTTGGAGTTCCAAAGGGGAAGATTCCTCCATAAACAAAATCAACCAAGTTGATCATGGAAGACATGTTACAAATGATGTTGACAGACAGCAGCAGCCAATTGTCCCAAGATCCTCGTCCGACAGAAGGTTAAGTAGCCATGCAAGATTGTGTGTTCCGGATCAAGAACTGTTTGAAGCTTCTTTGCTTCTTCGAAGGTTCACTTTTCAAGATCTTATGTTGGCAACACGAACTTTTAAGGTTGAGAATTTTCATGATGAGGAAGGGTTTGGAGTTTTGTTGAAGGGTTGGATTAATCCATATGGAAACTATGCAGCAAGGCCTGGAAAAGGGATTCCCATTGCAGTGAAGGCACTCAACTTAAACGAATGTCAAGATAAAAACGAATGGCTAGATGAAATTATTTATCTTAGTAAACTCCAACATTTAAATCTGGTTAGACTAGTCGGATTTTGTCTTGAGGATGACAAAAGGCTGCTTGTGTATGAGCATATATGTGAAGGAAGTTTAGAGAAGCATCTTTTCAAGAGAGCTGTACACCTTACATGGCCTACGAGGATGAAAATCGCAATTGGTGCTGCTAATGGCATGTCATTTTTGCATGAGGAAGCTTCAAGACCATTAATATTTCGAGATTTTAAGACATCTAGTATCTTATTGGATAAGGATTACAACACAAAACTTTGTGACTTTGGTCTTGCAAAAGATGCTTCAGTAGGACATGAAATGCGTACGACAACTAAAATGGTAGGATCAAAAGGCTACGAAGCCCCAGAATATATAATGACAGGAATCCTTACTCCAAAGAGCAATGTTTATAGCTTTGGACTGGTTCTACTTGAACTATTGACAGGAAGAAGAGTTATAGATAAAACAATGCCTATAGAGGAGCAAAACTTGATAGAATGGTTAGGACCTCGTCTTGGGAACAAAGCAAACTTCCATTATTTGATGGATCCTAGACTTGAAGGTCAATATCCAACAAAATTTGCTCATAGGACAATGAAGTTAGCTATTCATTGTCTTCGCCTTGACCCTAAAACAAGACCCCTTATGAGTGAAGTACTTCATGAGTTAAAATCTTTGCATGATGACATGCTTGGATCCTCAACCTCCCATGGAAGAAGGCATAAAGGTCCATCCAACCATGTTAGTCCTAACAAGTATGGTGTTGGAATATGTCCATCATCAAATTTTCCAAGGTGCTTCCAAGCCATGCCAGAATGTCAAGACTATCCTTTGCCTCTACCTCCATCTCCATCAAATCCAAGAGTTAGATCTTCCTCAAATCCTAGTTTGGAAATTTATTCAACCTAG 1614 0.3941 MTDVDGRPAAARARFSTNRFCVVNYLACLFLVFIIIRILFLNLYLLNVLGEMGSISGVRVGSSIGGKSKGGRKNKDVVQSSSGEGSRFWKKLRTFLGCMFWSSKGEDSSINKINQVDHGRHVTNDVDRQQQPIVPRSSSDRRLSSHARLCVPDQELFEASLLLRRFTFQDLMLATRTFKVENFHDEEGFGVLLKGWINPYGNYAARPGKGIPIAVKALNLNECQDKNEWLDEIIYLSKLQHLNLVRLVGFCLEDDKRLLVYEHICEGSLEKHLFKRAVHLTWPTRMKIAIGAANGMSFLHEEASRPLIFRDFKTSSILLDKDYNTKLCDFGLAKDASVGHEMRTTTKMVGSKGYEAPEYIMTGILTPKSNVYSFGLVLLELLTGRRVIDKTMPIEEQNLIEWLGPRLGNKANFHYLMDPRLEGQYPTKFAHRTMKLAIHCLRLDPKTRPLMSEVLHELKSLHDDMLGSSTSHGRRHKGPSNHVSPNKYGVGICPSSNFPRCFQAMPECQDYPLPLPPSPSNPRVRSSSNPSLEIYST 537
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu8g00906 537 ProSiteProfiles Protein kinase domain profile. 178 465 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu8g00906 537 Gene3D Phosphorylase Kinase; domain 1 153 263 - -
Vimu8g00906 537 Gene3D Transferase(Phosphotransferase) domain 1 265 475 - -
Vimu8g00906 537 PANTHER OS01G0588500 PROTEIN-RELATED 138 462 - -
Vimu8g00906 537 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 264 471 - -
Vimu8g00906 537 MobiDBLite consensus disorder prediction 513 537 - -
Vimu8g00906 537 Pfam Protein tyrosine and serine/threonine kinase 189 458 IPR001245 GO:0004672|GO:0006468
Vimu8g00906 537 SUPERFAMILY Protein kinase-like (PK-like) 151 457 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu8g00906 Vimu-Chr8 16236082 16245632 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu8g00906 160 484 Glycoside Hydrolase AT3G07070 43.161 1.04e-82 261
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Vimu8g00906 PK_Tyr_Ser-Thr 9.6e-38 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu8g00906 - - vum:124826039 882.093