Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu8g00905 ATGAAGAACAAAGATGTTGCTCAAGGTTCCATTGAAGAAAGATCAAGCTTTTGGAAGAAATTGAAGATTTTTCTTGGTTGCATGAACAAAAGCAAAGATGGTGAAGGAAAAAATGTCAGAAAAGATATTGTTCGTCACAAAAGGGCAAAACCCTCATCCACAGACGAAGGGCAGGAGTTTATTGCAACTTGTTCCAATCTTCGGAGGTTCACTTTTCTCGATATTCAGATTGCAACACAGAATTTTGGTTGCAGGAATTTTCTTGGTAGGGGAGGTTTTGGAACTGTGTTCAAAGGTTGGGTTGATGACAGAGGGGATTCTGCAGCAACACCTGGAACAATGGTTCCAGTAGCAGTGAAGACTCTAAACCCAAATGGATTTCAAGGTCATAAGCAATGGCTTGCTGAAATTAAATATCTGGGTGAACTCTATCATCCTAATCTAGTGAGATTGGTGGGTTATTGCATGGAGGAAGATAAAAGGGTACTCGTATACGAATACATGAATCGAGGAAGCTTAGAGAAGATTAAAATTGCAATGGATGCTGCCAATGGTTTGACATTTTTGCACGAGGAAGCTGCACGGGCTGTGATATTTCGAGATTTCAAGACATCCAATATCCTTCTGGATAAGGAATTCAATGCAAAACTTTCAGACTTTGGGTTTGCAAAAGATGCTCCAGTGGGAGATAAAAATCACGTGTCTACGGAGATTATGGGAACAGAAGGTTACATAGCCCCTGAGTATGTGTTGACAGGACACCTTACATCGAAGAGTGACGTGTATAGCTTTGGGATGGTTCTCCTTGAATTGTTGACAGGAAAAAGAGCAGTGGATCAAATGAGGCCTGCAAAAGAGAAAAACTTGGTGGACTGGTTGCGTCCTCGAATAAGGAGAAGAGAGAATTTTCATTACGTGATGGACCCTAAATTTGAAGGGCAGTATCCAATCAGAGATGCATATAGGGCAATGAAGTTGGCCGTTCAGTGTCTTCGGCATGATCCAAGTGGAAGACCACTGATGAGTGAAGTGGTCGGTGAGTTGAAGATTTTGCTGGCACGTGATGATGGCGTGTATTCTGCTCCCTCAATTTCACCTTCACCTGTACCATCTCCTTCACCTACAATCCCAGCAACCTCACTTGGGAGAATCCATGTCGGTCCTTCCAACCATGCCGCCGGTGCTGCTAACAAGTATGGCCTTAGAACTGCTTCAGAACCGAACGTTCCACGGCGTTTTCAGGCCTCACCGCTCGTCCAAGACAGCCCTCTCACTCCACCTTCATCCTAA 1290 0.4388 MKNKDVAQGSIEERSSFWKKLKIFLGCMNKSKDGEGKNVRKDIVRHKRAKPSSTDEGQEFIATCSNLRRFTFLDIQIATQNFGCRNFLGRGGFGTVFKGWVDDRGDSAATPGTMVPVAVKTLNPNGFQGHKQWLAEIKYLGELYHPNLVRLVGYCMEEDKRVLVYEYMNRGSLEKIKIAMDAANGLTFLHEEAARAVIFRDFKTSNILLDKEFNAKLSDFGFAKDAPVGDKNHVSTEIMGTEGYIAPEYVLTGHLTSKSDVYSFGMVLLELLTGKRAVDQMRPAKEKNLVDWLRPRIRRRENFHYVMDPKFEGQYPIRDAYRAMKLAVQCLRHDPSGRPLMSEVVGELKILLARDDGVYSAPSISPSPVPSPSPTIPATSLGRIHVGPSNHAAGAANKYGLRTASEPNVPRRFQASPLVQDSPLTPPSS 429
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu8g00905 429 ProSitePatterns Protein kinases ATP-binding region signature. 88 120 IPR017441 GO:0005524
Vimu8g00905 429 Gene3D Transferase(Phosphotransferase) domain 1 167 359 - -
Vimu8g00905 429 SUPERFAMILY Protein kinase-like (PK-like) 60 348 IPR011009 -
Vimu8g00905 429 Pfam Protein kinase domain 87 345 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu8g00905 429 Gene3D Phosphorylase Kinase; domain 1 41 166 - -
Vimu8g00905 429 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 172 360 - -
Vimu8g00905 429 PANTHER OS01G0588500 PROTEIN-RELATED 54 349 - -
Vimu8g00905 429 MobiDBLite consensus disorder prediction 385 429 - -
Vimu8g00905 429 ProSiteProfiles Protein kinase domain profile. 82 352 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu8g00905 429 FunFam Serine/threonine-protein kinase BIK1 49 167 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu8g00905 Vimu-Chr8 16230475 16233827 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu8g00905 53 376 Glycoside Hydrolase AT3G07070 45.455 1.25e-96 294
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Vimu8g00905 Pkinase 1.6e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu8g00905 - - vum:124826044 768.074