Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu8g00902 ATGAAAATTGCAATTGGTGCTGCCAATGGCCTTGCATTTTTACACGAGGAAGCTTCAAGGCCTGTAATATTTCCAGATTTTAAGCCATCTAAGATCCTATTGGATATGGACTACAATGCAAAACTTTGGGACTTTGGTCTTGCTCGAGAAATTCATGCACCAACTAAAGTAGTAGCAAGAAAAGGCTATGAAGCCCCTGAGTATCAGATGACAGGACACATTACTTCTGAGAGCAATGTTTATAGCTTTGGGATAGTTCTGCTTGAAATACTGACAGGAAGAAGAGCCTTGGATGAAACAATGCCAGCAGAGGAACAAAACCTGATAGAATGGTTGCGACCTCATCTCAGAAACAAAGCAAATTTTCATTATCTGATGGATCCTAGACTTGAAGGGCAATACCCTACAAAGTGTGCTCATAGGACAATGAGAATAGCTACTCATTGTCTTCGCTTAGACCCTAAAGCAAGACCCCTTATGAGTGAAGTAGTTCACAAGTTGAAGTATCTGCATGATGAGATGATTGGTGATCTTGGTCCCAAAACCTCATACGGTGTAGGCCCTTCCAACCATGCTAGTGCTAACAAGTATGCCCTTGGAAGATGTTCATCACCTTTAAGGTGTTTTCAAGGTTCACCACAGCAAGAATATTACCCTCTTCCCCTACCCCCAGCTCCACCAAATCCTTCACTTGCATCTTCGTCTAAATCCTAG 714 0.423 MKIAIGAANGLAFLHEEASRPVIFPDFKPSKILLDMDYNAKLWDFGLAREIHAPTKVVARKGYEAPEYQMTGHITSESNVYSFGIVLLEILTGRRALDETMPAEEQNLIEWLRPHLRNKANFHYLMDPRLEGQYPTKCAHRTMRIATHCLRLDPKARPLMSEVVHKLKYLHDEMIGDLGPKTSYGVGPSNHASANKYALGRCSSPLRCFQGSPQQEYYPLPLPPAPPNPSLASSSKS 237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu8g00902 237 Pfam Protein kinase domain 5 165 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu8g00902 237 PANTHER OS01G0588500 PROTEIN-RELATED 1 170 - -
Vimu8g00902 237 ProSiteProfiles Protein kinase domain profile. 1 170 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu8g00902 237 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 1 176 - -
Vimu8g00902 237 Gene3D Transferase(Phosphotransferase) domain 1 1 177 - -
Vimu8g00902 237 SUPERFAMILY Protein kinase-like (PK-like) 2 168 IPR011009 -
Vimu8g00902 237 MobiDBLite consensus disorder prediction 217 237 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu8g00902 Vimu-Chr8 16200140 16201350 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu8g00902 1 170 Glycoside Hydrolase AT3G07070 47.727 1.84e-53 176
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Vimu8g00902 Pkinase 1.5e-21 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu8g00902 - - var:108344548 429.483