Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu8g00901 ATGGCCTTCCCTCCCTCTCACACCTTCATGTTCCAAACCCATGAAGATCATGACCACCACCAACTCCATCTACGCTCCACCTCTTCCTCCCTCAACGCCTTCCCCTCTTTCCCACCCCATCACTTTCAAGGGGGTGGTGCAGGTGCAGGTTTCATGATGAAGCGATCGATGTCGTTTTCAGGCATAGAGAACAAGTGCGATGAAGTGCATGGAGACGACGAGTTGTCAGATGATGGATCTCAGCTAGGGGAGAAGAAGAAGAGGCTGAGTTTGGAGCAGGTGAAGGCACTTGAGAAGAGTTTTGAGTTGGGGAACAAGCTTGAGCCTGAGAGAAAAATGCAGCTTGCCAAGGCTTTGGGGCTTCAACCGAGGCAAATCGCTATATGGTTCCAGAATAGGAGAGCAAGGTGGAAGACCAAGCAGCTTGAGAAGGAGTATGAAGTTCTAAAGAAGCAGTTTGAAGCTGTCAAAGCTGATAATGACTCCCTCAAGGCTCAGAATCAGAAGCTACATGCAGAGCTACAAAGTCTGAAAAATAGGGACTGCTGTGAAACCGGAACAGTAGTTAGCCAGAAGAAAGACACTGAGGGTTCTTGGAGCAATGGAAGCAACAACAGTTCAGAAATCAACTTGGACCTCTCAAGAACACCAGTGATGAACAGTCCTGTGTCTTCTCAGAATGGAAAAAGCCTTCTACCAATTTCCCACAAGCCAACAACCATGACTCAACTCCTCCAAAGCTCATCAAGATCAGATCTCCAAGATGAAAGCTTCTGCAACATGTTTCACAACATTGATGAGCAGCAGAATTTTTGGCCCTGGACCGAGCAGCAGCACCAGTTTCATTAA 849 0.4759 MAFPPSHTFMFQTHEDHDHHQLHLRSTSSSLNAFPSFPPHHFQGGGAGAGFMMKRSMSFSGIENKCDEVHGDDELSDDGSQLGEKKKRLSLEQVKALEKSFELGNKLEPERKMQLAKALGLQPRQIAIWFQNRRARWKTKQLEKEYEVLKKQFEAVKADNDSLKAQNQKLHAELQSLKNRDCCETGTVVSQKKDTEGSWSNGSNNSSEINLDLSRTPVMNSPVSSQNGKSLLPISHKPTTMTQLLQSSSRSDLQDESFCNMFHNIDEQQNFWPWTEQQHQFH 282
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu8g00901 282 ProSiteProfiles 'Homeobox' domain profile. 80 140 IPR001356 GO:0003677
Vimu8g00901 282 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 55 274 IPR045224 GO:0003700
Vimu8g00901 282 SMART HOX_1 83 144 IPR001356 GO:0003677
Vimu8g00901 282 SUPERFAMILY Homeodomain-like 76 142 IPR009057 -
Vimu8g00901 282 PRINTS Lambda-repressor HTH signature 111 120 IPR000047 GO:0003677
Vimu8g00901 282 PRINTS Lambda-repressor HTH signature 120 136 IPR000047 GO:0003677
Vimu8g00901 282 Pfam Homeobox associated leucine zipper 140 180 IPR003106 GO:0006355|GO:0043565
Vimu8g00901 282 ProSitePatterns 'Homeobox' domain signature. 115 138 IPR017970 GO:0000981|GO:0006355
Vimu8g00901 282 Coils Coil 132 180 - -
Vimu8g00901 282 FunFam Homeobox-leucine zipper protein ATHB-13 77 144 - -
Vimu8g00901 282 Gene3D - 77 157 - -
Vimu8g00901 282 Pfam Homeodomain 85 138 IPR001356 GO:0003677
Vimu8g00901 282 CDD homeodomain 85 141 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu8g00901 Vimu-Chr8 16181490 16184276 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu8g00901 1 276 Homeobox Transcription Factor Family AT3G01220 51.203 4.11e-84 252
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Vimu8g00901 Homeodomain 1.2e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu8g00901 K09338 - gmx:100790803 476.092
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu8g00901 8 16181490 16184276 Vimu6g00849 6 9359347 9361834 PCT