Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu8g00890 ATGTCAGAAAAGACATCCAATATCCTTTTGGATAAGGAATTCAATGCAAAACTTTCAGACTTTGGGTTTGCAAAAGATGCTCCCGTGGGAGATAAAAATCACGTGTCTACGGAGATTATGGGAACAGAAGGTTACATAGCCCCTGAGTATGTGTTGACAGGACACCTTACATCGAAGAGTGACGTGTATAGCTTTGGGATGGTTCTCCTTGAATTGTTGACAGGAAAAAGAGCAGTGGATCAAATGAGGCCTGCAAAAGAGAAAAACTTGGTGGACTGGTTGCGTCCTCGAATAAGGAGAAGAGAGAATTTTCATTACGTGATGGACCCTAAATTTGAAGGGCAGTATCCAATCAGAGATGCATATAGGGCAATGAAGTTGGCCGTTCAGTGTCTTCGGCATGATCCAAGTGGAAGACCACTGATGAGTGAAGTGGTCGGTGAGTTGAAGATTTTGCTGGCACGTGATGATGGCGTGTATTCTGCTCCCTCAATTTCACCTTCACCTGTACCATCTCCTTCACCTACAATCCCAGCAACCTCACTTGGGAGAATCCATGTCGGTCCTTCCAACCATGCCGCCGGTGCTGCTAACAAGTATGGCCTTAGAACTGCTTCAGAACCGAACGTTCCACGGCGTTTTCAGGCCTCACCGCTCGTCCAAGACAGCCCTCTCACTCCACCTTCATCCTAA 693 0.4675 MSEKTSNILLDKEFNAKLSDFGFAKDAPVGDKNHVSTEIMGTEGYIAPEYVLTGHLTSKSDVYSFGMVLLELLTGKRAVDQMRPAKEKNLVDWLRPRIRRRENFHYVMDPKFEGQYPIRDAYRAMKLAVQCLRHDPSGRPLMSEVVGELKILLARDDGVYSAPSISPSPVPSPSPTIPATSLGRIHVGPSNHAAGAANKYGLRTASEPNVPRRFQASPLVQDSPLTPPSS 230
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu8g00890 230 Pfam Protein kinase domain 4 146 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu8g00890 230 Gene3D Transferase(Phosphotransferase) domain 1 3 160 - -
Vimu8g00890 230 ProSiteProfiles Protein kinase domain profile. 1 153 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu8g00890 230 MobiDBLite consensus disorder prediction 186 230 - -
Vimu8g00890 230 PANTHER OS01G0588500 PROTEIN-RELATED 4 150 - -
Vimu8g00890 230 SUPERFAMILY Protein kinase-like (PK-like) 4 156 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu8g00890 Vimu-Chr8 15996646 15997836 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu8g00890 4 177 Glycoside Hydrolase AT3G07070 51.724 2.52e-55 180
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Vimu8g00890 Pkinase 4.7e-21 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu8g00890 - - vra:106755672 426.402