Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu8g00885 ATGGGAAGGCCACCTTGTTGTGATAAAGGTGTGAAGAAAGGACCTTGGACTCCTGAAGAAGATATCATTTTGGTGTCCTACATACAGGACCATGGTCCTGGCAATTGGAAAGCTGTTCCTACCAATACTGCAAGTCAGAGAAATATTTTTGATTCTGGTGATCTGAATGGGTTGTCAAGGTGCAGCAAAAGTTGTAGACTTAGATGGACTAATTATCTGAGGCCAGGAATCAAAAGGGGTAACTTCACTGAACAAGAGGAGAAGATGATAATCCATCTTCAAGCACTTTTAGGGAACAGATGGGCTGCTATAGCTGCATATCTGCCACAAAGAACAGATAATGACATAAAAAACTACTGGAACACCTATCTGAAAAAAAAGCTGAACAAATTGGAAGCAAGTGGTTCTGAAGGAAGTTTGGGGCATGTTGGGGTTTCAGTTTCTCAGTCAATGTCTAGAGGGCAGTGGGAAAGAAGGCTACAAACGGATATTCACATGGCAAAGAAAGCTCTCAGTGAAGCTCTTTCACCAAAGAAGACATCATCATCTACCTTTTTAGCTGAGTTAAATTCAAACCGTTCCAATGATAATAGCACTTGCTCCATCTACAACTCCACAAAACCAACACCGTCCATAAGCTATGCCTCAAGTGCTGACAACATAGCTCGTTTGTTGAAAGGGTGGATGAAAAGCACACCAAAACGTTCTGCCACTCAAAACTCCATCATCAACTTGGCTTGTGCAGGAGCTGACACTGCTTCCAGTGAAGGAACTACAAAGGGAAGCTCAACCAGTGTGGAGTTGTCTGAGACTTTTCAGACCTTGTTTGGTTATGAGTCTTTGGAGTCTTCAAATTCTGAGTTTTCACCTTCTCTTTCTCCTGAGGGCACTCTCTTCCAAGATGAGAGCAAGCCTGATATTACTGGAATAGACGTGCCTTTCTCTTTGCTTGAGAAATGGCTTCTGGATGATTCTGGTTGTCAAGAGAAACTTAGTTTCTAG 1002 0.4251 MGRPPCCDKGVKKGPWTPEEDIILVSYIQDHGPGNWKAVPTNTASQRNIFDSGDLNGLSRCSKSCRLRWTNYLRPGIKRGNFTEQEEKMIIHLQALLGNRWAAIAAYLPQRTDNDIKNYWNTYLKKKLNKLEASGSEGSLGHVGVSVSQSMSRGQWERRLQTDIHMAKKALSEALSPKKTSSSTFLAELNSNRSNDNSTCSIYNSTKPTPSISYASSADNIARLLKGWMKSTPKRSATQNSIINLACAGADTASSEGTTKGSSTSVELSETFQTLFGYESLESSNSEFSPSLSPEGTLFQDESKPDITGIDVPFSLLEKWLLDDSGCQEKLSF 333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu8g00885 333 ProSiteProfiles Myb-like domain profile. 8 73 IPR001005 -
Vimu8g00885 333 CDD SANT 81 124 IPR001005 -
Vimu8g00885 333 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 8 73 IPR017930 -
Vimu8g00885 333 SMART sant 12 75 IPR001005 -
Vimu8g00885 333 SMART sant 78 126 IPR001005 -
Vimu8g00885 333 ProSiteProfiles Myb-like domain profile. 74 124 IPR001005 -
Vimu8g00885 333 CDD SANT 15 73 IPR001005 -
Vimu8g00885 333 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 74 128 IPR017930 -
Vimu8g00885 333 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 254 - -
Vimu8g00885 333 Gene3D - 12 78 - -
Vimu8g00885 333 Pfam Myb-like DNA-binding domain 13 73 IPR001005 -
Vimu8g00885 333 Pfam Myb-like DNA-binding domain 79 124 IPR001005 -
Vimu8g00885 333 SUPERFAMILY Homeodomain-like 10 120 IPR009057 -
Vimu8g00885 333 Gene3D - 80 139 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu8g00885 Vimu-Chr8 15953923 15955114 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu8g00885 1 324 MYB Transcription Factor Family AT5G62470 50.138 1.35e-101 301
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vimu8g00885 Myb_DNA-binding 2.7e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu8g00885 K09422 - gmx:780542 469.159