Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu8g00884 ATGGTGATGTCGGGCACTTTTGTTCTATTTAGGCATAAAAGAGCATCTACGAGGGAGTTGAAGAACAATGAATATTTTGTCTTACTATATTACATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTAATATTCTTATCACTTTTGTTTTCAACAAGCTAAGAGAACGTCTGAGAAAATTTCATTTGAAGCAGGTGAAAGGGAAGAGAAGAAGGATGAGGAAGCGGCAAGTGGTTGTGAGAAGAGAGGAGCCTCAGAGAAGTGTTAGGAGTGTGAAATATGGTGAGTGCCAGAAGAATCATGCAGCAAATGTTGGAGGGTATGCTGTTGATGGTTGCAGAGAGTTCATGGCAAGTGGTGGAGAAGGGACAACTGCTGCTCTCACTTGTGCTGCATGTGGCTGCCACAGGAACTTCCACAAGAGACAGGTTGAAACTGAAGTAGTGTGTGAGTGCTCCTCACCTCCCTCCATTGGCACATGA 498 0.3956 MVMSGTFVLFRHKRASTRELKNNEYFVLLYYIIIIIIIIIIIIIIIIINILITFVFNKLRERLRKFHLKQVKGKRRRMRKRQVVVRREEPQRSVRSVKYGECQKNHAANVGGYAVDGCREFMASGGEGTTAALTCAACGCHRNFHKRQVETEVVCECSSPPSIGT 165
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu8g00884 165 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 99 148 IPR006456 -
Vimu8g00884 165 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 98 148 IPR006456 -
Vimu8g00884 165 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 82 152 - -
Vimu8g00884 165 Pfam ZF-HD protein dimerisation region 97 149 IPR006456 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu8g00884 Vimu-Chr8 15917797 15926710 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu8g00884 78 164 Zinc finger-homeobox gene family AT3G28917 69.697 7.47e-43 136
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Vimu8g00884 ZF-HD_dimer 2.4e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu8g00884 - - aprc:113868039 153.68