Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu8g00883 ATGGAGATAATAACACCAACGCCACCACCAACAGCCGTCACTACCACAAACGCCGCCCCCAAATCGCCGGAACTCGACATAGAGACTCCCACCCGGATCCATCAAGCCGCCGGAAACTCCAATCCCAGTCCAAAGCCGGTGTCTTTCTCCAACGGGGTCTTGAAGCGCCACCATGCAAACAACCGCACCGCCGCCCCGGTCGTTTACAAGGAATGCTTGAAGAACCACGTTGCCAGCTTAGGCGGCCACGCCCTCGACGGCTGCGGCGAGTTCATGCCATCGCCCGCGGCAACCGCCGACGACCCCAGCTCCATCAAATGCGCCGCCTGCGGCTGCCACCGTAACTTCCACCGCCGCGAGCCAGAGGAGCCGCCAATTTCCCCGGCGACGCATCACGTTCTGGAGTACCAGCCCCACCACCGTCACCACCCTCCTCCGCCGCACCGGAGTCCCAATTCCTCCTCTCCTCCGCCGATCTCCTCCTACCCCTCCGCACCCCACATGCTCCTCGCTCTCTCCAGCGGCGGCGGCCTCTCCGTGGCCCCGGAGAACACCGCCGCGCCGGCTCCGGCGCACCACTCCCGGAAGCGCTTCCGCACGAAATTCACCCAGGAGCAGAAGGAGAAGATGCACGAGTTCGCCGACAAAGTGGGGTGGAAGATGCAGAAGCGCGACGAAAACATGGTTATGGAGTTTTGCAACGAGGTAGGTGTGGACAGAGGAGTCCTCAAAGTGTGGATGCACAACAACAAGAACACTTTTGCCAAAAAGGACAACCTCAATGGTAGCCCTGCTAACGGGATTAACCATGTCTCCTCTCCAAACAAAGCTACCGTCAGAAGCAACAACGTTAATGGCCTCGAACAGGAACACGGCGGCGGAATCAACGGTAACAGTGACCACCACGACCACGACCACAACCACAACCTCGGTTCTTCTCATGATGTGAACGAGTACGATAATGACAGTGGAACAAACGGCGGTGGAACAAACGGGTCTTCTTCTTCTTAA 1011 0.5895 MEIITPTPPPTAVTTTNAAPKSPELDIETPTRIHQAAGNSNPSPKPVSFSNGVLKRHHANNRTAAPVVYKECLKNHVASLGGHALDGCGEFMPSPAATADDPSSIKCAACGCHRNFHRREPEEPPISPATHHVLEYQPHHRHHPPPPHRSPNSSSPPPISSYPSAPHMLLALSSGGGLSVAPENTAAPAPAHHSRKRFRTKFTQEQKEKMHEFADKVGWKMQKRDENMVMEFCNEVGVDRGVLKVWMHNNKNTFAKKDNLNGSPANGINHVSSPNKATVRSNNVNGLEQEHGGGINGNSDHHDHDHNHNLGSSHDVNEYDNDSGTNGGGTNGSSSS 336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu8g00883 336 Gene3D - 181 256 - -
Vimu8g00883 336 MobiDBLite consensus disorder prediction 137 197 - -
Vimu8g00883 336 MobiDBLite consensus disorder prediction 148 163 - -
Vimu8g00883 336 MobiDBLite consensus disorder prediction 1 27 - -
Vimu8g00883 336 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 69 120 IPR006456 -
Vimu8g00883 336 NCBIfam homeobox domain, ZF-HD class 195 252 IPR006455 -
Vimu8g00883 336 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 43 253 - -
Vimu8g00883 336 MobiDBLite consensus disorder prediction 295 315 - -
Vimu8g00883 336 SUPERFAMILY Homeodomain-like 185 256 IPR009057 -
Vimu8g00883 336 FunFam Zinc-finger homeodomain protein 2 183 256 - -
Vimu8g00883 336 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 69 120 IPR006456 -
Vimu8g00883 336 MobiDBLite consensus disorder prediction 254 289 - -
Vimu8g00883 336 MobiDBLite consensus disorder prediction 8 22 - -
Vimu8g00883 336 MobiDBLite consensus disorder prediction 254 336 - -
Vimu8g00883 336 MobiDBLite consensus disorder prediction 316 336 - -
Vimu8g00883 336 Pfam ZF-HD protein dimerisation region 67 121 IPR006456 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu8g00883 Vimu-Chr8 15880842 15882851 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu8g00883 13 254 ZF-HD Transcription Factor Family AT3G28920 54.264 3.47e-74 229
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Vimu8g00883 ZF-HD_dimer 7.1e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu8g00883 - - gmx:100814730 441.81
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu8g00883 8 15880842 15882851 Vimu6g00866 6 9573787 9575448 PCT