Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu8g00869 TTGAGAAGCCTTCCTCTCTATTTATATTTGCTTTTGGCTTTTGGAGAAGTAATTCATATAGAGAGAAAGAACATGGAGGAGAGGAATGAGATGGAAAAGATTGATGATGTTATGCCAGGATTTCGTTTTCACCCCACTGATGAAGAGCTTGTTGGTTTCTATCTCAAGAGAAAAATTCAGCAGAAGTCTCTCCCTATTGAACTGATTAAGCAAGTGGATATTTACAAACATGATCCATGGGACCTTCCAAGGGAGAAAGAGTGGTACTTCTATTGCCCAAGGGACAGAAAATACAGGAACAGTGCTCGTCCAAATAGGGTCACAAGAGCTGGGTTTTGGAAGGCCACTGGAACTGACAGACCTATATATTCCTCTGAAGGGAAGTGCATTGGTCTGAAGAAGTCTCTTGTGTTCTACAGAGGAAGAGCTGCCAAAGGGATGAAAACTGATTGGATGATGCATGAGTTTAGGCTTCCTTGCATCTCTGACTCAGCCCCTACTAAAAAACTCTCAGACAAAACCCTCCCTCCAAGTGATTCATGGGCAATCTGTAGGATATTCAAGAAAACCAACTCCCTTTCCATGGCACAGAAAGCTTTATCTAACCCTTGGATCTCTCAGTTATCAGGAAGCATGGTATCTGACATGTTCACACAGGGTGCAGAAACAAACCATCACCTAGGATCACCAGCCATTCAATTTTGTTATGAAAAGCAAGAGTTAAACCAAGTCTCCAATAGTGACATCAACACCAACTTCACAGCTTCAGATATTCCCAGTTACAAACCCATCAACAGCAGCACAGTTCCCAAGCCTTCTCCACAAATTCCAGTTTCAGATGACTTCATATTCTACACCGAACACACCAAGTGCACACTTGATGCCACTTCCATGCTTTCTCCCAACCCTGACTACATAACATTTGAAGAGCCAAACCAACAACAGTATAGTGGCTTCTCAACCAATCTACCTCACTTCATCCAACAAAACATGACCACAGAAACAGTAACAAAAGAACAACAAGATTGGGAAACAATTGGGAGAACCACTGGATTTCCCTTTACTTTGCTTCCCCCATATGATGCATGGAAGTCTTCATCTGTGGCATGGGATTCACCTTCTTGCCCCAGTGACATGTCCACTACCTATTCCACCAGTAAATGCTACACTTGA 1173 0.4271 MRSLPLYLYLLLAFGEVIHIERKNMEERNEMEKIDDVMPGFRFHPTDEELVGFYLKRKIQQKSLPIELIKQVDIYKHDPWDLPREKEWYFYCPRDRKYRNSARPNRVTRAGFWKATGTDRPIYSSEGKCIGLKKSLVFYRGRAAKGMKTDWMMHEFRLPCISDSAPTKKLSDKTLPPSDSWAICRIFKKTNSLSMAQKALSNPWISQLSGSMVSDMFTQGAETNHHLGSPAIQFCYEKQELNQVSNSDINTNFTASDIPSYKPINSSTVPKPSPQIPVSDDFIFYTEHTKCTLDATSMLSPNPDYITFEEPNQQQYSGFSTNLPHFIQQNMTTETVTKEQQDWETIGRTTGFPFTLLPPYDAWKSSSVAWDSPSCPSDMSTTYSTSKCYT 390
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu8g00869 390 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 36 286 - -
Vimu8g00869 390 ProSiteProfiles NAC domain profile. 37 189 IPR003441 GO:0003677|GO:0006355
Vimu8g00869 390 FunFam NAC domain-containing protein 35 46 192 - -
Vimu8g00869 390 Gene3D NAC domain 46 194 IPR036093 GO:0003677|GO:0006355
Vimu8g00869 390 Pfam No apical meristem (NAM) protein 39 158 IPR003441 GO:0003677|GO:0006355
Vimu8g00869 390 SUPERFAMILY NAC domain 33 189 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu8g00869 Vimu-Chr8 15742590 15744858 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu8g00869 26 205 NAC Transcription Factor Family AT5G39820 66.000 1.20e-90 275
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vimu8g00869 NAM 2.8e-35 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu8g00869 - - gmx:100777630 604.749