Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu8g00863 AGAGCAAAAGCTACTACAGGTGCTAGTTTCCACTTGCAAATGGGACGATCACCATGCTGCGACAAGGTAGGTTTAAAGAAAGGACCATGGACTCCGGAAGAAGATCAGAAGCTCTTAGCTTACATTGAAGAACATGGTCATGGAAGCTGGCGTGCCTTGCCAGCAAAAGCTGGGCTTCAGAGGTGTGGCAAGAGCTGTAGACTGAGATGGACCAATTATCTCAGACCTGATATTAAGAGAGGAAAGTTCAGTCTGCAAGAGGAACAAACCATCATTCAACTCCATGCCCTCTTAGGAAACAGGTGGTCGGCAATAGCCACACACTTGCCAAAGAGAACGGATAACGAGATCAAGAACTACTGGAACACACATCTTAAGAAAAGGTTAACAAAAATGGGAATTGACCCTGTCACACACAAACCCAAAAACGATGCACTTCTCTCCAGTGATGGTCAATCAAAAACCGCTGCAAACCTCAGCCACATGGCCCAGTGGGAAAGTGCTCGACTTGAAGCTGAAGCAAGACTAGTGAGAGAGTCAAAGCTACGTTCACATTCACTTCAGCAACAAATTGGAACTTCTTCTACATTTGCATCATCGTCTTCTGCATCCACTTCAGCTTCAGTTCTCAACAATAATAAACCAGAAGCACCACCTCCGCCACCGCCGCCGCCCTCGCGGTCCTCCCTTGACGTCCTCAAGGCTTGGAACAACGGAGGTTGGTTGAAGTCCAGTGAAGGGAGTGGCGCCATTGCAAGCACGGTTGGGGTAAGTGGAGACCTTGAGTCTCCTACTTCTACGTTATCTTTCTCTGAGAATGCACCACCGATTATGAATGCGATTGGAGGAGAAAATAACAACAACAATGATAACGCAATGCCTATGATCGAGTTTGTGGGAAGTTCGGGTAATTCTTCTTCTCTCGTGAAAGAAGAGGGTGAGCAAGAATGGAAAGGTTATGATAGTTCTATCAACACTTTCAGTTCTGGTTTGCATGAGTTCACAATGGCCATGGAGGGCAGTTGGGTGCACGAGACTCTCAGAACCAATGGCTCACATGACGACATTGTTGAAGAAGGCTTCACCAATCTTCTCCTTAAGACAAACTCGGAAGATCCAAGTTTGTCGTCAGAAGGTGGAGGAGAGTCTAACAATGGTGACGGTGGTAGCGCCGGTCACAGTGATTTTTACGAAGATAACAACAACTATTGGAACAGCATCCTTAATTTAGTGAATTCATCTCCTTCTCATTCTCCTATGTTCTGA 1266 0.4621 RAKATTGASFHLQMGRSPCCDKVGLKKGPWTPEEDQKLLAYIEEHGHGSWRALPAKAGLQRCGKSCRLRWTNYLRPDIKRGKFSLQEEQTIIQLHALLGNRWSAIATHLPKRTDNEIKNYWNTHLKKRLTKMGIDPVTHKPKNDALLSSDGQSKTAANLSHMAQWESARLEAEARLVRESKLRSHSLQQQIGTSSTFASSSSASTSASVLNNNKPEAPPPPPPPPSRSSLDVLKAWNNGGWLKSSEGSGAIASTVGVSGDLESPTSTLSFSENAPPIMNAIGGENNNNNDNAMPMIEFVGSSGNSSSLVKEEGEQEWKGYDSSINTFSSGLHEFTMAMEGSWVHETLRTNGSHDDIVEEGFTNLLLKTNSEDPSLSSEGGGESNNGDGGSAGHSDFYEDNNNYWNSILNLVNSSPSHSPMF 421
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu8g00863 421 ProSiteProfiles Myb-like domain profile. 75 125 IPR001005 -
Vimu8g00863 421 Pfam Myb-like DNA-binding domain 27 74 IPR001005 -
Vimu8g00863 421 Pfam Myb-like DNA-binding domain 80 125 IPR001005 -
Vimu8g00863 421 CDD SANT 82 125 IPR001005 -
Vimu8g00863 421 MobiDBLite consensus disorder prediction 214 228 - -
Vimu8g00863 421 SUPERFAMILY Homeodomain-like 24 121 IPR009057 -
Vimu8g00863 421 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 14 256 - -
Vimu8g00863 421 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 22 74 IPR017930 -
Vimu8g00863 421 FunFam MYB transcription factor 82 129 - -
Vimu8g00863 421 Gene3D - 82 129 - -
Vimu8g00863 421 SMART sant 26 76 IPR001005 -
Vimu8g00863 421 SMART sant 79 127 IPR001005 -
Vimu8g00863 421 MobiDBLite consensus disorder prediction 133 160 - -
Vimu8g00863 421 ProSiteProfiles Myb-like domain profile. 22 74 IPR001005 -
Vimu8g00863 421 MobiDBLite consensus disorder prediction 184 232 - -
Vimu8g00863 421 MobiDBLite consensus disorder prediction 369 395 - -
Vimu8g00863 421 FunFam MYB-related transcription factor 26 79 - -
Vimu8g00863 421 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 75 129 IPR017930 -
Vimu8g00863 421 MobiDBLite consensus disorder prediction 184 213 - -
Vimu8g00863 421 MobiDBLite consensus disorder prediction 145 160 - -
Vimu8g00863 421 CDD SANT 29 74 IPR001005 -
Vimu8g00863 421 Gene3D - 26 79 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu8g00863 Vimu-Chr8 15672111 15674228 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu8g00863 14 421 MYB Transcription Factor Family AT3G01140 54.327 2.01e-124 362
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vimu8g00863 Myb_DNA-binding 1.6e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu8g00863 K09422 - gmx:100787446 696.041