Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu8g00862 ATGGATGCAATGGAGAACTATTATTATAGCCAGAGAGACACAATGGCAGAGGAAGCGTTTGATTTGCCACCAGGGTTCAGGTTCCATCCCACAGATGAAGAACTCATCACTCATTACCTCTCGCAGAAGGTTCTTGACAACTGCTTCTGCTCAAGGGCCATTGGAGAGGCTGATTTGAACAAGTGCGAGCCATGGGATTTGCCTTGTATGGCAAAAATGGGTGAAAAGGAGTGGTATTTTTTCTCCGTGAGGGACAGAAAATACCCAACTGGGCAAAGGACTAATAGAGCCACCGGTGCTGGTTACTGGAAGGCCACAGGCAAAGACAAAGAGATATACAAAGCAAGGAAACTCATTGGGATGAAGAAAACTCTGGTTTTCTACAAAGGAAGAGCTCCGAGTGGTGAAAAAACCAACTGGGTCATGCATGAATACAGATTAGAAGACGATCATTCTATGCACAATCCACACAAAAAGGCCATGAATGATTGGGCCATCTGCAGGATTTTTGAGAAGACCAACTGCGGGAAGAAAATGCAGATTTCTGGTTTGGTGAGGTTGAGTTCCTTTGGGAAGGAGATGCCTTCACTGATGGATTCTTCTCCATACAACACGAATGAAGCAAAACCTGTTTTGGGGGAATCGTCACAGTTCTCATCAGATCGAAACCAGAGCGATGAAAACATAGCTGAGAGCTTAGAAACTCTGATGATGGCATCTTCATCTTCATATTCTTCAAACCCCTTTGATGTTTCCCCTGCTTCTTGGAGTGTGCCCCACCAATCCCTCCAAGCTGGGAACTCAAACTATTCCATGGATGATGAACAAAAGTCCATGTTGGGGATGCTGATTGAAAACCATGGATCAAGCACAACCCTAAGAACTCATAAAGCACTGAATAATGACTTTGATGCTGACACTTCCTCTTTCATCTACAATGATGAAATCTTTCACAGATCATTCGGGAACCAGGAATATTCATCACCTTCTCTGTGGGGATTCTAA 1005 0.4408 MDAMENYYYSQRDTMAEEAFDLPPGFRFHPTDEELITHYLSQKVLDNCFCSRAIGEADLNKCEPWDLPCMAKMGEKEWYFFSVRDRKYPTGQRTNRATGAGYWKATGKDKEIYKARKLIGMKKTLVFYKGRAPSGEKTNWVMHEYRLEDDHSMHNPHKKAMNDWAICRIFEKTNCGKKMQISGLVRLSSFGKEMPSLMDSSPYNTNEAKPVLGESSQFSSDRNQSDENIAESLETLMMASSSSYSSNPFDVSPASWSVPHQSLQAGNSNYSMDDEQKSMLGMLIENHGSSTTLRTHKALNNDFDADTSSFIYNDEIFHRSFGNQEYSSPSLWGF 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu8g00862 334 FunFam NAC domain-containing protein 100-like 31 176 - -
Vimu8g00862 334 ProSiteProfiles NAC domain profile. 22 172 IPR003441 GO:0003677|GO:0006355
Vimu8g00862 334 Gene3D NAC domain 31 176 IPR036093 GO:0003677|GO:0006355
Vimu8g00862 334 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 21 259 - -
Vimu8g00862 334 Pfam No apical meristem (NAM) protein 23 147 IPR003441 GO:0003677|GO:0006355
Vimu8g00862 334 SUPERFAMILY NAC domain 15 172 IPR036093 GO:0003677|GO:0006355
Vimu8g00862 334 MobiDBLite consensus disorder prediction 199 225 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu8g00862 Vimu-Chr8 15635960 15637125 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu8g00862 21 330 NAC Transcription Factor Family AT5G07680 51.572 8.09e-99 293
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vimu8g00862 NAM 3.6e-40 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu8g00862 - - vun:114181690 556.599