Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu8g00840 ATGGCAAGGAAGAGAAAAGTTGGTGAAGTTGTGGAAGAGAGAAACATATGTGAGGGAACCATGGCTTGGGATGAGATGATGAAACAAGCTGCAGCACTTGGAGGAGTCCAAAGAGCCAGAAAGAGGTTTGTTGGGGTGAGGCAAAGGCCATCAGGTAGATGGGTGGCTGAGATCAAAGACACCATTCAGAAGATCAGAGTGTGGTTGGGGACTTTTGACACTGCTGAGGAAGCTGCAAGAGCCTATGATGAGGCTGCATGCTTGCTTAGAGGTGCAAACACAAGGACAAACTTCTGGCCATGTTCTCAATCTTCCACAAGTCCAGCACTTTCATCAAAAATCACAAATCTCCTCCTTCAAAGGCTTAAAGAAAGGAACAACAACACTTGCTCCTCTTCCTCATCCTCCACCTCCACCTCACTTCTCATAAACCACCAACATATGCAACAAGAGGTTGATGCATATGGTGATGGATCAACACAATTCTCAATTGACCAATTCACTGACTTTCTCAATGACCCTGAAGATTACAGCACCAGCAGCAATGACTTCATCAACAACAGTGCACAGATTGACTACATTACTAGCAGTTTTGAATCATGTTTGACTGAAGATACAAAAGTGGATGTGCAATACAAAACCAGCATTGTGACACCACAGACTTCAAGTACTGATGACAGCAACTCAGGAGTGGAGGACAGTGAAGAAGAAGGCACTGATTTCAGGTTTCTAGACAACATTGCTCCACCTGGTTACTATTCTCCTTTTGAGATGGCTGAAGAGATGGAGGAGCCTGTGGATGCAGAGAACTATGGTGGTGATGAGCCTTCAATGCTCAGAGCTATGATGAAGAGAATGACATATGAGAGGAAGTTCTCAGCTTCTCTCTATGCCTTCAATGGAATACCTGAATGCTTGAAGTTGAAACTTGAATCAGCAAACATGAAGGGAAGAGGAATAATAACTGATCAATTAACCAGCCTCCAAATGGCCTGCAGCAAAAACAGGCTTGAGAAGAATGAAGAGGAGAAAGAGTACATGGCAACAATGGATGAGAAACAGGAAGAACAACACCAACAACAATCAACAACAACAACTGACATGGATTCTTCTAGTGTTGATGGAGAACTGTTACTTTGGAATTCACTAGATCTTCCTCCAATTTGCTTTGTTAACTTGCTAGAAAACGGTTCATTCAATTAG 1203 0.4306 MARKRKVGEVVEERNICEGTMAWDEMMKQAAALGGVQRARKRFVGVRQRPSGRWVAEIKDTIQKIRVWLGTFDTAEEAARAYDEAACLLRGANTRTNFWPCSQSSTSPALSSKITNLLLQRLKERNNNTCSSSSSSTSTSLLINHQHMQQEVDAYGDGSTQFSIDQFTDFLNDPEDYSTSSNDFINNSAQIDYITSSFESCLTEDTKVDVQYKTSIVTPQTSSTDDSNSGVEDSEEEGTDFRFLDNIAPPGYYSPFEMAEEMEEPVDAENYGGDEPSMLRAMMKRMTYERKFSASLYAFNGIPECLKLKLESANMKGRGIITDQLTSLQMACSKNRLEKNEEEKEYMATMDEKQEEQHQQQSTTTTDMDSSSVDGELLLWNSLDLPPICFVNLLENGSFN 400
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu8g00840 400 MobiDBLite consensus disorder prediction 339 358 - -
Vimu8g00840 400 Gene3D AP2/ERF domain 41 99 IPR036955 GO:0003700|GO:0006355
Vimu8g00840 400 MobiDBLite consensus disorder prediction 218 239 - -
Vimu8g00840 400 CDD AP2 41 98 IPR001471 GO:0003700|GO:0006355
Vimu8g00840 400 SMART rav1_2 42 105 IPR001471 GO:0003700|GO:0006355
Vimu8g00840 400 Coils Coil 336 359 - -
Vimu8g00840 400 PRINTS Ethylene responsive element binding protein signature 43 54 IPR001471 GO:0003700|GO:0006355
Vimu8g00840 400 PRINTS Ethylene responsive element binding protein signature 65 81 IPR001471 GO:0003700|GO:0006355
Vimu8g00840 400 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 23 293 - -
Vimu8g00840 400 MobiDBLite consensus disorder prediction 339 371 - -
Vimu8g00840 400 FunFam ethylene-responsive transcription factor RAP2-11 41 100 - -
Vimu8g00840 400 Pfam AP2 domain 42 91 IPR001471 GO:0003700|GO:0006355
Vimu8g00840 400 SUPERFAMILY DNA-binding domain 42 99 IPR016177 GO:0003677
Vimu8g00840 400 ProSiteProfiles AP2/ERF domain profile. 42 99 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu8g00840 Vimu-Chr8 15355407 15356609 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu8g00840 40 118 AP2-EREBP Transcription Factor Family AT5G19790 73.418 7.20e-33 122
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Vimu8g00840 AP2 7.7e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu8g00840 K09286 - gmx:100786711 637.106