Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu8g00839 ATTATAAAAATGGACAGGTCAACTGGCCGCAGTGGTGGTGGAAGTGTGGACACGTGTCTACCAAATTATAAGTTGGGGAAAACACTTGGCATTGGATCCTTTGGCAAGGTGAAAATTGCCGAACATGTACTGACTCGTCATAAAGTTGCTATAAAGATCCTTAACCGGCACAAGATAAGAAACATGGAAATGGAAGAAAAAGTTAGAAGGGAAATCAAAATTTTAAGATTGTTTATGCATCATCACATTATACGACTTTACGAGGTCATAGAAACCCCATCAGACATATTTGTTGTTATGGAGTACGTGAAATCTGGAGAGCTCTTTGATTACATAGTGGAGAAGGGTAGGTTGCAAGAGGACGAAGCCCGCCATTTTTTTCAGCAGATAATTTCTGGTGTGGAGTACTGTCACAGGAATATGGTGGTTCATAGAGACTTGAAGCCTGAGAATTTACTTTTGGACTCCAAATTTAATATCAAGATTGCTGATTTTGGCTTGAGCAATATCATGCGTGATGGTCACTTCCTTAAGACAAGTTGTGGAAGCCCTAACTATGCGGCTCCTGAGGTTATCTCTGGGAAATTGTATGCTGGACCTGAAGTAGATGTCTGGAGCTGTGGTGTAATTTTATATGCTCTTCTCTGTGGCACTCTTCCTTTTGATGATGAAAACATTCCCAATCTTTTCAAAAAGATAAAGGTAATATTGCTCTCAATTTTCCTTTTTCTGTCTATGTTCAAAATATTGGGTGGGATATACACTCTTCCTAGTCATCTGTCACCTGGTGCTAGAGATTTGATTCCAAGGATGCTTGTGGTGGATCCCATGAAGAGGATGACCATACCTGAGATACGTCATCACCCATGGTTCCAAGTTCGTCTGCCACGTTATTTAGCAGTGCCACCACCAGATACACTGCAACAAGCCAAAAAGATTGACGAGGAGATTCTTCAAGAAGTGGTTAAAATGGGATTTGAAAGGAATCAATTGATTGAATCTCTTGCAAACAGAATACAAAATGAGGGTACTGTAACATACTATTTGCTATTGGACAACCGGTTCCGTGTATCTAGTGGTTATCTTGGAGCTGAATTTCAAGAGACAATGGATTCTGGTTTCAATCGGATCCATTCCAGTGAAGTTCCTTCGCCAGTTGTTGGACACCACAGCACAGGGTATATGGATTACCAGGGAGTAGGAATGCGGCAACAGTTCCCTGCTGAGAGAAAATGGGCCCTTGGGCTTCAGTCTCGAGCACAACCACGTGAAATAATGACTGAGGTCCTTAAAGCTCTGCAAGAATTAAATGTTTGTTGGAAGAAGATTGGACACTATAACATGAAGTGCAGATGGGTTGCTAGCATTCCCAGTCATCATGAAGGAATGATTAACAATTCTGTGCATAGTAATCATTACTTTGTAAATGATTCCAGCATTATTGAAGATGAGGCTGTTTCTAAGTCAAATGTGGTCAAGTTTGAAGTGCAGCTTTACAAAGCTCGTGAGGAGAAGTATCTACTTGATCTTCAGAGGGTCCAGGGCCCACAGTTTCTTTTCTTGGATCTCTGTGCTGCTTTCCTTTCACAGCTTCGTGTTCTCTAG 1605 0.4131 IIKMDRSTGRSGGGSVDTCLPNYKLGKTLGIGSFGKVKIAEHVLTRHKVAIKILNRHKIRNMEMEEKVRREIKILRLFMHHHIIRLYEVIETPSDIFVVMEYVKSGELFDYIVEKGRLQEDEARHFFQQIISGVEYCHRNMVVHRDLKPENLLLDSKFNIKIADFGLSNIMRDGHFLKTSCGSPNYAAPEVISGKLYAGPEVDVWSCGVILYALLCGTLPFDDENIPNLFKKIKVILLSIFLFLSMFKILGGIYTLPSHLSPGARDLIPRMLVVDPMKRMTIPEIRHHPWFQVRLPRYLAVPPPDTLQQAKKIDEEILQEVVKMGFERNQLIESLANRIQNEGTVTYYLLLDNRFRVSSGYLGAEFQETMDSGFNRIHSSEVPSPVVGHHSTGYMDYQGVGMRQQFPAERKWALGLQSRAQPREIMTEVLKALQELNVCWKKIGHYNMKCRWVASIPSHHEGMINNSVHSNHYFVNDSSIIEDEAVSKSNVVKFEVQLYKAREEKYLLDLQRVQGPQFLFLDLCAAFLSQLRVL 534
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu8g00839 534 Pfam Kinase associated domain 1 491 533 IPR001772 -
Vimu8g00839 534 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 312 352 IPR015940 -
Vimu8g00839 534 FunFam Non-specific serine/threonine protein kinase 12 104 - -
Vimu8g00839 534 CDD STKc_AMPK_alpha 20 291 - -
Vimu8g00839 534 SMART uba_6 314 351 IPR015940 -
Vimu8g00839 534 PANTHER SERINE/THREONINE KINASE 22 356 - -
Vimu8g00839 534 ProSitePatterns Protein kinases ATP-binding region signature. 29 52 IPR017441 GO:0005524
Vimu8g00839 534 Pfam Protein kinase domain 23 291 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu8g00839 534 ProSitePatterns Serine/Threonine protein kinases active-site signature. 142 154 IPR008271 GO:0004672|GO:0006468
Vimu8g00839 534 CDD AMPKA_C 409 531 - -
Vimu8g00839 534 ProSiteProfiles Kinase associated domain 1 (KA1) profile. 485 533 IPR001772 -
Vimu8g00839 534 Gene3D Kinase associated domain 1, KA1 415 532 - -
Vimu8g00839 534 Gene3D Transferase(Phosphotransferase) domain 1 14 369 - -
Vimu8g00839 534 FunFam Non-specific serine/threonine protein kinase 415 532 - -
Vimu8g00839 534 CDD UBA_SnRK1_plant 313 353 - -
Vimu8g00839 534 SMART serkin_6 23 291 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu8g00839 534 FunFam Non-specific serine/threonine protein kinase 14 369 - -
Vimu8g00839 534 ProSiteProfiles Protein kinase domain profile. 23 291 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu8g00839 534 SUPERFAMILY Protein kinase-like (PK-like) 20 292 IPR011009 -
Vimu8g00839 534 SUPERFAMILY KA1-like 348 533 IPR028375 -
Vimu8g00839 534 Pfam UBA/TS-N domain 313 349 IPR015940 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu8g00839 Vimu-Chr8 15347645 15352725 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu8g00839 23 292 CBL-interacting serine-threonine protein kinases AT2G26980 48.718 3.92e-86 271
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_AMPK Vimu8g00839 Pkinase 6.6e-80 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu8g00839 K07198 - gmx:547544 972.23