Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu8g00838 ATGGAGGACAGAGAGAGAACAGGGGAGGAGAGAGAAAATTTGGTGAAGGAGGGGGTTGTTCGTTTCCTTGTTCTATTCCACAACAAAGCTACCATTTTTCCATGTGCGTCTCGCACACCCTCTTGGGAAAACCCAAAGGGGAAGAAGAGAAAAGAAAACCAACAAGAACAACAACAAGGAACAAATAACAAAGTTGTTGTTTTTGTCGGAATTCGAAATGCCCCTGGGAAATTCTCCCCTACAATCGCCATCGTCCATTTTCTTCTTTTTTCTCGTCGTGATCATCTTCTTCTTGATCAAATGGGTTGCATCAGCTCCAAGAATGTGGTTGCCAGAGCGTATTCTCCATCTCCAACAATGGTGGAAATTTCAGAGCCGATTCGCGCTTCCAGCAGGGGCCATTCTGGATTGACGATTTTGGATTCTAAAGGAAATGTAGACAATGAGAGAAACAACAACAGCAACATCAAGATTAAGAAAAATAGTTCAAAGAAGAGTAATGGATCTTTTAGCTTACGGCATGGGTTGATTCACAGAAACGTGGAGGCTGAACAAAATGCTGTTGGTTGGCCGCCATGGCTCACTGCTGTTGCAGCAGAAGCCATTCAGGGATGGATCCCTCTCAAAGCAGATTCTTTTCAAAAGTTAGAAAAGATTGGACAAGGTACATATAGCAGTGTGTTTCGAGCTCGTGAAGTTGAAACTGGGAAGCTATTTGCTTTGAAAAAGGTGCGGTTTGACAATTTTCAACCTGAGAGTATTAGGTTTATGGCAAGAGAAATAACCATCCTTCGAAGGCTTGATCACCCAAACATCATGAAATTGGAAGGCATAATCACTTCTCGCCTATCAAATAGCATATACCTCGTATTTGAATACATGGAACATGATCTTGCTGGCTTAGTCTCACGTCCTGAGATAGTATTCACTGAATCACAGATAAAATGTTACATGAGGCAACTTTTAAGTGGACTCGAGCATTGTCATATGCGTGGTATTATGCACAGAGACATCAAAGTATCAAATATATTATTAAACAATGAAGGTGTTCTCAAGATAGGAGATTTTGGGTTAGCAAATACAATTAGTACAAGTAACAAAAATCCTTTGACAAGTCGTGTCGTGACTTTGTGGTATCGTCCTCCTGAGCTTTTGATGGGATCAACTAGCTATGGAGTGTCAGTAGATCTATGGAGTGTTGGTTGTGTATTTGCAGAACTTTTTCTCGGGAAGCCTATCCTTAAGGGAAGAACCGAGGTTGAACAATTGCACAAAATTTTTAAGTTGTGTGGTTCTCCACCTGAGGAGTTTTGGAAAAAGACCAAACTTCCTCATGCAACCATGTTTAAGCCTCAAGCAAATTATGAAAGCTCTCTTCGAGAAAGATGTGCAGATTTTCCTGAAACTGCTATAGACCTACTTGAGACTTTATTATCCATTGATGCAAGCAACCGAGGAACTTCCTCATCTGCCTTAATGTCTGAGAACATACAAAACACTTCTCAAAACGGCCATAAAGATGATGGTAAAACACATCTTACAAAAGGAAGAGGAGGAAACATGTACAAAGATCATGCAAAGCCTGCAATGGATACCATGTCTGAGACCTCCCAAATGATGAATCTTGTTAATGGTAATGGATACAGTGTGCCAATGCAAGTCTCCGGATCTACTAATGATTATACATGGGTAAAAAGAAGAAAACAAGATGCATCATCAACAGTATCAGATGGATCAAAAAGCAAAATTAGTGCATTAGATACCAACTTTGCCAAAGGAACATATGATTTATCTAACCAAAGGGTTTCCATGGATTTTGATCCTGCTGAATTGGTGAATGCTCAGACATCCACACCAATAGCCAGAAAAGGACGGATATCAAGACAAGCTTCGTCAAATGGTCATATTGCGAAATCTCAAGAAAAGCTTCGTCATAACGACTATATCATCAAGGGTAACTGGAGGTTATTCGTTGATCAGGGATACTAG 1989 0.4042 MEDRERTGEERENLVKEGVVRFLVLFHNKATIFPCASRTPSWENPKGKKRKENQQEQQQGTNNKVVVFVGIRNAPGKFSPTIAIVHFLLFSRRDHLLLDQMGCISSKNVVARAYSPSPTMVEISEPIRASSRGHSGLTILDSKGNVDNERNNNSNIKIKKNSSKKSNGSFSLRHGLIHRNVEAEQNAVGWPPWLTAVAAEAIQGWIPLKADSFQKLEKIGQGTYSSVFRAREVETGKLFALKKVRFDNFQPESIRFMAREITILRRLDHPNIMKLEGIITSRLSNSIYLVFEYMEHDLAGLVSRPEIVFTESQIKCYMRQLLSGLEHCHMRGIMHRDIKVSNILLNNEGVLKIGDFGLANTISTSNKNPLTSRVVTLWYRPPELLMGSTSYGVSVDLWSVGCVFAELFLGKPILKGRTEVEQLHKIFKLCGSPPEEFWKKTKLPHATMFKPQANYESSLRERCADFPETAIDLLETLLSIDASNRGTSSSALMSENIQNTSQNGHKDDGKTHLTKGRGGNMYKDHAKPAMDTMSETSQMMNLVNGNGYSVPMQVSGSTNDYTWVKRRKQDASSTVSDGSKSKISALDTNFAKGTYDLSNQRVSMDFDPAELVNAQTSTPIARKGRISRQASSNGHIAKSQEKLRHNDYIIKGNWRLFVDQGY 662
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu8g00838 662 MobiDBLite consensus disorder prediction 499 522 - -
Vimu8g00838 662 MobiDBLite consensus disorder prediction 135 167 - -
Vimu8g00838 662 Gene3D Phosphorylase Kinase; domain 1 200 295 - -
Vimu8g00838 662 MobiDBLite consensus disorder prediction 134 167 - -
Vimu8g00838 662 Pfam Protein kinase domain 213 493 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu8g00838 662 ProSitePatterns Serine/Threonine protein kinases active-site signature. 333 345 IPR008271 GO:0004672|GO:0006468
Vimu8g00838 662 PANTHER CELL DIVISION PROTEIN KINASE 211 497 - -
Vimu8g00838 662 FunFam Mitogen-activated protein kinase 294 506 - -
Vimu8g00838 662 ProSitePatterns Protein kinases ATP-binding region signature. 219 242 IPR017441 GO:0005524
Vimu8g00838 662 Gene3D Transferase(Phosphotransferase) domain 1 296 571 - -
Vimu8g00838 662 FunFam probable serine/threonine-protein kinase At1g54610 200 295 - -
Vimu8g00838 662 MobiDBLite consensus disorder prediction 505 522 - -
Vimu8g00838 662 SMART serkin_6 213 497 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu8g00838 662 ProSiteProfiles Protein kinase domain profile. 213 497 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu8g00838 662 CDD STKc_CDK9_like 213 495 - -
Vimu8g00838 662 SUPERFAMILY Protein kinase-like (PK-like) 207 498 IPR011009 -
Vimu8g00838 662 MobiDBLite consensus disorder prediction 37 60 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu8g00838 Vimu-Chr8 15328973 15340642 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu8g00838 205 495 Core Cell Cycle Gene Families AT5G10270 48.860 1.11e-97 307
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Vimu8g00838 Pkinase 1e-69 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu8g00838 - - gmx:100790917 766.533