Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu8g00825 ATGGCAGAACCATCCACCGCCACCACCACCACCACGGCGGACCTTCCGCCGCCGGTTACCAAAAGATGGGCTGACGAAGCGGACGAAGAAACCGAAGCCTCCTCCACCGCCACCGCCACCGCCACTGAAGCCTCTTCCGTCAACCTCGATTCATTAAAAATTGAAGACAACGATGGGAACCCTCCCAAACTCTTGGATGACCCCGACGATTCTAGCATCCAAAAGGTTACCTCTGGAGAGACGCCGTACACGTCGGCTGCGAAGTTCGAGGACTTAAACCTCTCGCCGGAGCTTCTGAAAGGGCTCTACGTGGAGATGAAGTTCCAGAAGCCGAGCAAGATCCAGGCGATAAGTTTGCCGATGATCCTCAACCCGCCGCACCGCGACCTCATCGCGCAGGCGCACAACGGGTCTGGGAAGACTACGTGCTTCGTGCTTGGGATGCTCAGCCGCGTCGATCCCAAGGTGCAGGCTCCGCAGGCTCTCTGTGTCTGCCCCACTCGGGAGTTGGCTAATCAGAACATCGAGGTTCTCCGCAAGATGGGGAAGTACACAGGTATTGCGTCGGAGTGCGCTGTGCCGACGGATAGCAATGCGCTCTCGATCGCGAAAAGGGCGCCGATTATGGCGCAGGTGGTGATCGGAACCCCTGGCACCATCAAGAAGTGGATGAGCTTCAAGAAACTTGGGGCCGCCAGGTTGAAGATTCTTGTTTTTGACGAGGCAGATCAAATGCTTGCGGAGGTAATTTTATTGCGTTGCCCACTTGCTGAACTTGTTATTACCCTTTACCGTCACCTAGGTCCTTTGGGCTGGATTGTGCGTAGGATTACAGTTGACCAGGATCGGGAGAATGATGTGATCTCTCATATGCTAATAGTGGGATTTACAAAATCTAGCAAGTCATGGTGCCCAAAAATTCTGGGACGGGCCCCTTTGATTTCCAATGCCAATGCAGCTTTGGCCCTGCTGGTTGTATCTCTCTTGCGAACTTTGCTTCATGCAAACAGAATTGAAAGTCCCTTTGATGGATTTAAAGATGATTCCCTGAGGATAATGAAAGAAATAGAAAAAGTCAATTCTAATTGTCAGGTTCTTCTGTTTTCTGCTACATTTAATGACACCGTCAAGAATTTCGTTTCAAGGACAGTCAAAGAGGATCATAATAAACTTTTTGTAAAGAAAGAAGAACTATCTTTAGATGCTGTGAAGCAATATAAAGTCTACTGTTCTGATGAACTTGCGAAGATTGAAGTGATAAAAGATTACATATTTGAAATAGGAGAGAATGTGGGGCAAACCATCATATTTGTGCGTACAAGAAATAGTGCACAAATGTTGCATAAATCACTTGTTGACATGGGCTACGAGGTTACATCTATACAAGGTGCTCTTGGTCATGACGAGAGAGAGAAAATTGTTAAGGAGTTCAGAGATGGTTTGACTCAAGTTCTTATTTCAACTGATCTTCTTGCTCGTGGCTTTGATCAGCAACAGGTTAATTTGGTCATCAATTATGATCTTCCAATGAAACACACTGCCAGCTATACCCGTGAACCTGAGCCTGATTGTGAAGTGTATTTGCATAGGGTTGGCAGAGCTGGGCGTTTTGGGCGCAAAGGGGCTGTATTTAACCTGATATGTGATCAAAAGGATGAAAGGCTCATGTCGAAGATTGAGAATCACTTCGGCACTCGTGTAACTGAGGTGTGCGAGCACAAAGTGTTGAAGACTATAAAGGTGCTCTCAAGGAAGCCGGTTTACTGCAATGATGTGAATATGCACAAGTCGAAGGCTGTCGATAACTGTTGTGTTTCTCCTCAATATGCCTGGATTCTGGCCAAGGAATTCGATCATAACAATGAATGGTTTGATTATTCTGCAGGAGCACATGCGGATGATGGTTAA 1908 0.4727 MAEPSTATTTTTADLPPPVTKRWADEADEETEASSTATATATEASSVNLDSLKIEDNDGNPPKLLDDPDDSSIQKVTSGETPYTSAAKFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILNPPHRDLIAQAHNGSGKTTCFVLGMLSRVDPKVQAPQALCVCPTRELANQNIEVLRKMGKYTGIASECAVPTDSNALSIAKRAPIMAQVVIGTPGTIKKWMSFKKLGAARLKILVFDEADQMLAEVILLRCPLAELVITLYRHLGPLGWIVRRITVDQDRENDVISHMLIVGFTKSSKSWCPKILGRAPLISNANAALALLVVSLLRTLLHANRIESPFDGFKDDSLRIMKEIEKVNSNCQVLLFSATFNDTVKNFVSRTVKEDHNKLFVKKEELSLDAVKQYKVYCSDELAKIEVIKDYIFEIGENVGQTIIFVRTRNSAQMLHKSLVDMGYEVTSIQGALGHDEREKIVKEFRDGLTQVLISTDLLARGFDQQQVNLVINYDLPMKHTASYTREPEPDCEVYLHRVGRAGRFGRKGAVFNLICDQKDERLMSKIENHFGTRVTEVCEHKVLKTIKVLSRKPVYCNDVNMHKSKAVDNCCVSPQYAWILAKEFDHNNEWFDYSAGAHADDG 635
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu8g00825 635 CDD SF2_C_DEAD 403 547 - -
Vimu8g00825 635 Pfam DEAD/DEAH box helicase 113 248 IPR011545 GO:0003676|GO:0005524
Vimu8g00825 635 Gene3D - 65 274 IPR027417 -
Vimu8g00825 635 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 49 556 - -
Vimu8g00825 635 SMART helicmild6 445 538 IPR001650 -
Vimu8g00825 635 SMART ultradead3 107 406 IPR014001 -
Vimu8g00825 635 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 419 579 IPR001650 -
Vimu8g00825 635 MobiDBLite consensus disorder prediction 33 53 - -
Vimu8g00825 635 MobiDBLite consensus disorder prediction 1 16 - -
Vimu8g00825 635 MobiDBLite consensus disorder prediction 1 77 - -
Vimu8g00825 635 Pfam Helicase conserved C-terminal domain 416 538 IPR001650 -
Vimu8g00825 635 MobiDBLite consensus disorder prediction 56 70 - -
Vimu8g00825 635 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 159 556 IPR027417 -
Vimu8g00825 635 Gene3D - 400 581 IPR027417 -
Vimu8g00825 635 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 87 116 IPR014014 GO:0003724
Vimu8g00825 635 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 121 390 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu8g00825 Vimu-Chr8 15206854 15212276 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu8g00825 344 570 Eukaryotic Initiation Factors Gene Family AT1G72730 36.797 1.96e-35 136
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu8g00825 K18655 - qsa:O6P43_010208 386.726