Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu8g00800 ATGGCAACAGCCAGGACTGTTAAGGATGTTTCGCCACATGATTTTGTGAAGGCTTACGCATCCCACCTCAAGCGTTCTGGCAAGATCGAGCTTCCTGAGTGGACTGATATTGTAAAAACAGCCAAATCTAAGGAACTGGCTCCATATGATCCAGACTGGTATTACGTGAGAGCTGCCTCAATGGCAAGAAAAATTTATTTGAGAGGTGGTCTCGGTGTTGGTGCTTTCCAGAGGATCTATGGTGGAAGCAAGAGGAACGGAAGCCGCCCACCACATTTCTGCAAGAGCAGTGGTTCTATTGCCAGACACATTCTGCAACAGTTGGAGATCATGAACATTATTGAGATTGACACTAAAGGGTAA 363 0.4601 MATARTVKDVSPHDFVKAYASHLKRSGKIELPEWTDIVKTAKSKELAPYDPDWYYVRAASMARKIYLRGGLGVGAFQRIYGGSKRNGSRPPHFCKSSGSIARHILQQLEIMNIIEIDTKG 120
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu8g00800 120 ProSitePatterns Ribosomal protein S19e signature. 90 109 IPR018277 GO:0003735|GO:0005840|GO:0006412
Vimu8g00800 120 SMART Ribosomal_S19e_2 6 119 IPR001266 GO:0003735|GO:0005840|GO:0006412
Vimu8g00800 120 FunFam 40S ribosomal protein S19 2 120 - -
Vimu8g00800 120 PANTHER 40S RIBOSOMAL PROTEIN S19 2 120 IPR001266 GO:0003735|GO:0005840|GO:0006412
Vimu8g00800 120 Pfam Ribosomal protein S19e 6 117 IPR001266 GO:0003735|GO:0005840|GO:0006412
Vimu8g00800 120 SUPERFAMILY "Winged helix" DNA-binding domain 6 119 IPR036390 -
Vimu8g00800 120 Gene3D - 1 120 IPR036388 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu8g00800 Vimu-Chr8 14922362 14923628 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu8g00800 1 120 Cytoplasmic Ribosomal Protein Gene Family AT3G02080 90.000 1.48e-81 233
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu8g00800 K02966 - gmx:100805469 236.113