Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu8g00771 ATGACCATGTATGCTCGCCGCTCTCTGCACCCGGGTGGACCTGGCTGGAATACACTCAACAGACCGCCACCCGAGGTTAGTCCAGTGGAACCACCTCAGTATAGAAATACCATGAGGCTAAAGGACCTCCTGCCATTCCCACGCATGAGTTACCCTCCTCTACTTGAGAAGGCGAGACCACCAGGAGTCTTCAGATGTGATCTGAAGGGTGATCGGAACAGTAAATGGGTTAGAAATTTAGAGAGAAGCGTGCCACCTGACTTCCACTTTCTGGGCTTCACTGCTCTGCTGCTGCTGCACGGATCACGAAAGAAGGGAATTAAAAACTTGGCAGAGTTGGTCTCCCACTTTACCAGGGAAGACCGGACGGCTGACATGTGTACCCCACTAAGGAGGGGTATTAAATGGGGTGTGACAATGTTTTCTGCTTCTTCTCTTACTATCTCTTCTTCTTCTTCTTCTTCTTCTTCTTCGTCTTCTTCTTCGTCTTCTTCTTCTTGTTCTGCTTCTCCTCCTTCTTCTTCTTCTCATTGCAGTTCAGTGATCAAAGGCAATTCCCTCATGCAATTTCTCTTCGTTTTCTTAGTGGTCCTTTTCACGTTGCAAAACGACGCCTTTGCGATCGATTCGGACAAATCCGCGCTCCTCCGTATGAAGGCGTCGCTGTCCGACCCCGCCGGCGTTCTCTCCACGTGGACCACCGCCGACGGTTCTCACTCCGGCCACTGCTACTGGTCTGGCGTCCTATGTGACGCGAACTCCCGCGTCGTCGCCGTCAACGTCACCGGAAACGGCGCCAGCCGAACCTCGCACCCGTGCTCCGATTCCTCTAAATTCCCCCTCTACGGTTTCGGAATTCGGCGAACATGCAAAGGTAGCAAAGGTTCTCTCTTCGGAAACGTTTCTTCTGTTGGTTTCGATTTCATCAGTGAGCTCACTGAGCTTAGGGTTTTGTCTCTCCCCTTCAACGCGTTGGAGGGGGAAATTCCCGAAGCAATTTGGGGAATGGAAAATCTAGAGGTTCTCGATTTAGAAGGGAACTTGATAAGTGGTTATCTTCCCTTGAGAATTAACGGCTTGAGGAAGTTGAGGGTTCTGAATCTTGGGTTTAATAGGATTATTGGGGAGGTACCTAGTTCAATTGCGTCTCTTGAGAGTTTGGAGGTTCTGAATTTGGCTGGCAATGAATTGAATGGTTCTGTGCCCGGTTTTGTCGGGAGGCTTAGAGGGGTGTATCTTTCGTTTAATCAGTTCAGTGGGGTTGTTCCTCGAGAGATTGGGGAGAATTGTTGGAAGCTTGAACATTTGGATTTGTCTGGGAATTCGTTGGTTCAGGGGATTCCGGGGAGTTTAGGCAATTGTGAGAGGTTGAGGACGCTTTTGCTGTATTCCAATTTGTTGGAAGAGGGTATTCCTGGTGAGCTTGGGAAGCTCAAGAGCCTTGAGGTGTTGGATGTTTCCAGGAACACTCTCAGTGGCTCTGTGCCGAGGGAGCTTGGGAATTGCTCAGAGTTGTCGGTTCTTGTGCTGTCAAATCTCTTTGATGTTCGCGGTGATGCTGCCGGTGATTTTGGGAAATTAGGTTCAGTGAATGATGAGGTGAATTATTTTGAAGGTTCAATGCCGCTGGAGGTTTTTTCGCTTCCAAACTTGAGGATATTGTGGGCTCCCATGGTGAATCTAGAAGGTAGTTTTCAAGGGAATTGGGGTGGTTGTCAGAGCTTGGAGATGGTAAATTTGGCTCAGAACTTTTTGAGTGGGGAATTTCCGAACCAGCTTGGTGTCTGCAAGAGGCTGTATTTTCTTGATTTAAGTGGAAACAACCTTACCGGGGTGCTTTCTGAAGAACTTCACGTTCCCTGTATGAGTGTTTTTGATGTTAGTGGGAATATGTTATCTGGCTCAGTTCCTGATTTCTCCAATACCGTTTGTTCCCCTGTTCCTTCTTGGAACGGAAACCTGTTTGAAGGTGGGAATGTTTCCTCGCCATATGCCTCGTTTTTTTTGTCAATGGTTCATGAAAGATCTCTTTTTACATCAATGGGGGGAATTGGTACTTCTGTTGTTCACAACTTTGGGCAAAACAGCTTTACTGGCATTCAGTCGCTACCCGTACCTCATGACAGGCTGGGGAAGAAGAATGGTTACACGTTTCTTGTTGGTGGAAATATTCTTACAGGAACATTTCCTACATATTTATTTGAGAAATGTGATAGACTAGACGCATTCCTTTTAAATGCCAGTTATAATAATATATCTGGTTATATACCTTTCAATATCAGTCGAATGTGCAGATCATTGAAATTTTTGGACGTGTCTGGAAATCAACTTGCGGGACCTATTCCTGTTGATTTAGGGAATGCTGTATCCCTTGTATCGCTAAACCTCAGCAGGAATCAATTACAAGGTCAAATTCCTTCCAGCCTTGGCCAGATGAAGAATCTGAAGTTTCTCTCTTTGGCTGGTAATAAGTTAAACGGCTCAATTCCTACCAGCCTGGGGCAGTTGTACTCTTTGGAAGTCTTTGACCTCTCTTCAAACTCTCTTACTGGTGAAATTCCAAAGGCTATTGAGAACATGAGAAATCTGACTGATGTTTTGCTCAATAACAACAATCTTTCTGGTCATATTCCTGATGGTTTGGCACATGTTCCTTCACTCTCAGTATTCAATGTGTCTTTCAACAACTTATCTGGATATTTTCCTTCCAACAGTGGCTTGTTTAAATGCAGCAGTGCTGTTGGAAATCCATACCTAAGTCCCTGCCGCGGAGTGTCTCTGACTGTGCCATCAGGGAATCAGCCAGGGCCGATTGATAGCAACTCTTATAATTCGGAAACAGAGCAAGCTACTGGCAAGAAGAGTGGGAGTGAATTCAGTTCTATTGAAATAGCATCTATAACTTCTGCTTCAGCCATTGTTTCGGTACTTATAGCCCTGATTGTTCTATTCTGTTACACACGGAAGTGGAAGCCAAGGTCCAGGGTTGTTGGCTCTACAAGAAAAGAAGTTACAGTGTTTACTGATATTGGGGTCCCATTGACATTTGAAAGTGTTGTCCAAGCCACAGGAAATTTCAATGCTGGCAACTGTATCGGGAGTGGAGGTTTTGGGGCAACATACAAGGCGGAGATAGCATCAGGAATCCTGGTGGCAGTCAAACGACTCGCAGTTGGACGTTTCCAAGGTGTTCAACAATTCCATGCCGAGATCAAGACCCTTGGGAGGCTTCATCATCCTAACCTTGTCACTCTGATTGGTTATCATGCTTGTGAAACAGAGATGTTTCTCATATACAATTATTTGCCAGGTGGTAATCTCGAAAAGTTTATCCACGAGAGGTCCACGAGGGCTGTAGACTGGAGAATTCTTCACAAGATTGCATTGGACATTGCCCGAGCACTTGCCTATCTGCATGATCAGTGTGTTCCCCGTGTTCTTCACCGTGATGTAAAGCCCAGCAACATCTTGTTGGATGACGATTTCAATGCTTATCTATCTGACTTTGGATTGGCAAGACTTCTGGGAACATCAGAGACACATGCTACCACTGGTGTAGCTGGAACATTTGGATATGTTGCCCCTGAATATGCCATGACATGCCGTGTTTCTGATAAGGCTGACGTGTATAGCTATGGTGTGGTGCTTCTGGAGTTGCTCTCAGACAAGAAGGCTTTGGACCCTTCATTTTCTTCTTTTGGAAATGGGTTCAATATAGTGGCATGGGCATGCATGCTACTGAAACAAGGAAGGGCAAATGAGTTTTTCACTGCTGGGTTATGGGAAGCAGGACCTGGAGAGGATTTGGTAGAGGTTCTTCACTTGGCTATTGTCTGTACTGTTGACTCTCTCTCTACCAGACCTACAATGAAACAAGTTGTGAGAAGGCTCAAGCAGCTTCAACCCCCATCATGCTAG 3918 0.4597 MTMYARRSLHPGGPGWNTLNRPPPEVSPVEPPQYRNTMRLKDLLPFPRMSYPPLLEKARPPGVFRCDLKGDRNSKWVRNLERSVPPDFHFLGFTALLLLHGSRKKGIKNLAELVSHFTREDRTADMCTPLRRGIKWGVTMFSASSLTISSSSSSSSSSSSSSSSSSCSASPPSSSSHCSSVIKGNSLMQFLFVFLVVLFTLQNDAFAIDSDKSALLRMKASLSDPAGVLSTWTTADGSHSGHCYWSGVLCDANSRVVAVNVTGNGASRTSHPCSDSSKFPLYGFGIRRTCKGSKGSLFGNVSSVGFDFISELTELRVLSLPFNALEGEIPEAIWGMENLEVLDLEGNLISGYLPLRINGLRKLRVLNLGFNRIIGEVPSSIASLESLEVLNLAGNELNGSVPGFVGRLRGVYLSFNQFSGVVPREIGENCWKLEHLDLSGNSLVQGIPGSLGNCERLRTLLLYSNLLEEGIPGELGKLKSLEVLDVSRNTLSGSVPRELGNCSELSVLVLSNLFDVRGDAAGDFGKLGSVNDEVNYFEGSMPLEVFSLPNLRILWAPMVNLEGSFQGNWGGCQSLEMVNLAQNFLSGEFPNQLGVCKRLYFLDLSGNNLTGVLSEELHVPCMSVFDVSGNMLSGSVPDFSNTVCSPVPSWNGNLFEGGNVSSPYASFFLSMVHERSLFTSMGGIGTSVVHNFGQNSFTGIQSLPVPHDRLGKKNGYTFLVGGNILTGTFPTYLFEKCDRLDAFLLNASYNNISGYIPFNISRMCRSLKFLDVSGNQLAGPIPVDLGNAVSLVSLNLSRNQLQGQIPSSLGQMKNLKFLSLAGNKLNGSIPTSLGQLYSLEVFDLSSNSLTGEIPKAIENMRNLTDVLLNNNNLSGHIPDGLAHVPSLSVFNVSFNNLSGYFPSNSGLFKCSSAVGNPYLSPCRGVSLTVPSGNQPGPIDSNSYNSETEQATGKKSGSEFSSIEIASITSASAIVSVLIALIVLFCYTRKWKPRSRVVGSTRKEVTVFTDIGVPLTFESVVQATGNFNAGNCIGSGGFGATYKAEIASGILVAVKRLAVGRFQGVQQFHAEIKTLGRLHHPNLVTLIGYHACETEMFLIYNYLPGGNLEKFIHERSTRAVDWRILHKIALDIARALAYLHDQCVPRVLHRDVKPSNILLDDDFNAYLSDFGLARLLGTSETHATTGVAGTFGYVAPEYAMTCRVSDKADVYSYGVVLLELLSDKKALDPSFSSFGNGFNIVAWACMLLKQGRANEFFTAGLWEAGPGEDLVEVLHLAIVCTVDSLSTRPTMKQVVRRLKQLQPPSC 1305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu8g00771 1305 FunFam LRR receptor-like serine/threonine-protein kinase RPK2 990 1101 - -
Vimu8g00771 1305 Pfam Leucine rich repeat 790 849 IPR001611 GO:0005515
Vimu8g00771 1305 MobiDBLite consensus disorder prediction 930 954 - -
Vimu8g00771 1305 Gene3D Transferase(Phosphotransferase) domain 1 1102 1302 - -
Vimu8g00771 1305 Gene3D Ribonuclease Inhibitor 207 517 IPR032675 -
Vimu8g00771 1305 Pfam Leucine rich repeat N-terminal domain 209 251 IPR013210 -
Vimu8g00771 1305 ProSiteProfiles Protein kinase domain profile. 1026 1300 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu8g00771 1305 Gene3D Ribonuclease Inhibitor 518 654 IPR032675 -
Vimu8g00771 1305 MobiDBLite consensus disorder prediction 149 171 - -
Vimu8g00771 1305 Gene3D Ribonuclease Inhibitor 674 920 IPR032675 -
Vimu8g00771 1305 FunFam LRR receptor-like serine/threonine-protein kinase RPK2 528 703 - -
Vimu8g00771 1305 FunFam LRR receptor-like serine/threonine-protein kinase RPK2 408 518 - -
Vimu8g00771 1305 Gene3D Phosphorylase Kinase; domain 1 989 1101 - -
Vimu8g00771 1305 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1146 1158 IPR008271 GO:0004672|GO:0006468
Vimu8g00771 1305 Pfam Protein kinase domain 1029 1227 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu8g00771 1305 CDD STKc_IRAK 1032 1300 - -
Vimu8g00771 1305 SUPERFAMILY L domain-like 208 513 - -
Vimu8g00771 1305 SUPERFAMILY L domain-like 537 919 - -
Vimu8g00771 1305 FunFam LRR receptor-like serine/threonine-protein kinase RPK2 1102 1304 - -
Vimu8g00771 1305 FunFam LRR receptor-like serine/threonine-protein kinase 762 833 - -
Vimu8g00771 1305 Pfam Leucine Rich Repeat 362 384 IPR001611 GO:0005515
Vimu8g00771 1305 Pfam Leucine Rich Repeat 432 454 IPR001611 GO:0005515
Vimu8g00771 1305 FunFam Leucine-rich repeat receptor protein kinase EMS1 834 913 - -
Vimu8g00771 1305 MobiDBLite consensus disorder prediction 1 32 - -
Vimu8g00771 1305 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 408 1299 - -
Vimu8g00771 1305 SUPERFAMILY Protein kinase-like (PK-like) 1008 1297 IPR011009 -
Vimu8g00771 1305 SMART serkin_6 1026 1304 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu8g00771 1305 ProSitePatterns Protein kinases ATP-binding region signature. 1032 1054 IPR017441 GO:0005524
Vimu8g00771 1305 SMART LRR_typ_2 384 406 IPR003591 -
Vimu8g00771 1305 SMART LRR_typ_2 860 883 IPR003591 -
Vimu8g00771 1305 SMART LRR_typ_2 478 502 IPR003591 -
Vimu8g00771 1305 SMART LRR_typ_2 812 836 IPR003591 -
Vimu8g00771 1305 SMART LRR_typ_2 360 383 IPR003591 -
Vimu8g00771 1305 SMART LRR_typ_2 312 336 IPR003591 -
Vimu8g00771 1305 SMART LRR_typ_2 432 454 IPR003591 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu8g00771 Vimu-Chr8 14652758 14663435 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu8g00771 209 1305 Receptor kinase-like Gene Family AT3G02130 63.750 0.0 1317
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XV Vimu8g00771 Pkinase 1.1e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu8g00771 - - vum:124828178 2142.47