Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu8g00756 ATGAAGAAATTATTCTTAGTTTTAGTCATTTTATTTTTCATTGTCAATGCTACTATTCGTCCAAAGTGGGACAAGGAGCTGTTGGAGAATGAAAAAAACTTGGAAGTCTTAAAATATGATATAGTCGTAGTTTTAGATGGTAGTGGTAATTTTACTACCATTTCTAAAGCTATAGAAGCTGCTCCTGTGTTGAGTTCCAGGAGAATTGTTATAAAAGTAAAAGGAGGCATATATCAAGAGACTCTGGAATTTCCCTCTAACAAGACTAACCTCTTTTTGGTTGGGGATGGAAGAGGCATCACTGTCATTACCGGAACCAAAAACGGGCGAGCTGGTTTCAATACCTTGGATACTGCAACTGTAGTTGTTAACACAAAACATTTTCTGGCGAGTAACATTACTTTCCAGAATACAGCAGGACCTTCAAACAACCAAGCTGTTGCCCTAGCGCTCACAGGGACTTTTTCTGCATTTTACAACTGTGAGATGTTGGGATATCAAGACACTTTATATGTTATGCAAGGTAAACATTTTTTTGTGAAGTGTCTTATTGAAGGCACGGTAGATTTTATTTTTGGCGACACGGCACAAGTGGTATTACAAGACTGTGATATCCAAGTGAGAATTCCTCTCATAGGCCAGCCGAACGTCATAACCGCTCAAGGAAGAAAAACAAATAATGAAGAGGGTGGAATTGTAATCCAAAACTGTAGGATTGGTGCCAGTAAGGAGTTTGAAGGCGTCAAAGAGAAATTCAAAACATATTTAGGGAGGCCATGGAAGAATTATTCAAGAACTATTATAATGGAGAGTTATATGAGTGATATAATTGACCCAGCTGGCTGGATAGAGTGGGAGGGCACTACTCTTGGTCTTGACACTCTATTTTATAGAGAGTATAATAACAATGGACCTGGTGCTCAAACCTCCAGAAGGGTCACATGGAAGGGATTCAAAGTTATCACTCATGCTGTTGAGACCGAACCTTTTACTGCAAGAAACTTCATTAATGGCTCTCAATGGTTGAATTCTACTGGCTTTCCTTATAAATTAGACTTATAA 1062 0.3851 MKKLFLVLVILFFIVNATIRPKWDKELLENEKNLEVLKYDIVVVLDGSGNFTTISKAIEAAPVLSSRRIVIKVKGGIYQETLEFPSNKTNLFLVGDGRGITVITGTKNGRAGFNTLDTATVVVNTKHFLASNITFQNTAGPSNNQAVALALTGTFSAFYNCEMLGYQDTLYVMQGKHFFVKCLIEGTVDFIFGDTAQVVLQDCDIQVRIPLIGQPNVITAQGRKTNNEEGGIVIQNCRIGASKEFEGVKEKFKTYLGRPWKNYSRTIIMESYMSDIIDPAGWIEWEGTTLGLDTLFYREYNNNGPGAQTSRRVTWKGFKVITHAVETEPFTARNFINGSQWLNSTGFPYKLDL 353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu8g00756 353 FunFam Pectinesterase 34 353 - -
Vimu8g00756 353 Pfam Pectinesterase 40 338 IPR000070 GO:0030599|GO:0042545
Vimu8g00756 353 ProSitePatterns Pectinesterase signature 2. 184 193 IPR033131 -
Vimu8g00756 353 SUPERFAMILY Pectin lyase-like 37 351 IPR011050 -
Vimu8g00756 353 PANTHER PECTINESTERASE 35 343 - -
Vimu8g00756 353 Gene3D - 35 353 IPR012334 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu8g00756 Vimu-Chr8 14457490 14458675 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu8g00756 21 353 Carbohydrate Esterase AT1G53830 55.786 2.62e-125 370
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu8g00756 K01051 - gmx:100776623 387.497