Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu8g00750 ATGGTTCTTCAAAACGATATTGATTTGCTGAATCCTCCCGCTGAGTTGGAGAAGAGAAAGCACAAGCTCAAGCGTCTTGTTCAGTCACCAAATTCTTTTTTTATGGATGTCAAGTGCCAAGGCTGCTTCAACATAACAACTGTGTTTAGTCACTCTCAGACAGTTGTGGTATGTGGTAACTGCCAGACTGTGTTGTGCCAACCAACCGGTGGAAGAGCAAGGTTAACTGAAGGTGCTCATTTAGGAAGAAGGAAGATGAATGGTGCAGTAATCAAACTTTGGAATTTCACCAAGGGACCTAAAACAAATTATGAGGGTGTGAGTTCCTCAAAATTCTACAGAAAATCTGCAGAATTCACGCTGGGCGCCTCTAAATGGCGCTGGGCGCCATTTCCTGCTGTTTTTCAGCAGAAATTCACGCTGGGCGCAGTCGTTCTGGGGGTTTTTGACCCTTCCGGAGCCATTGGTGAGGGTCTCCAAGCTGCGCTATCACTGGAGGTCTATTCCGTGGTAAGGGACCAGCCTTGTGTGTGGTCGGGTGAAACCCCTCGGCAATGGCTTTGCAAAGTAGTAAAGGCCACCACAAGTGCACAACCCGCCCCAGCTCTATATACATTCTTAGACGATTATTTTGATGTGTTTTATGAAATTAATGTCCATGTTTATGAGGATTTGCAAGTTTATGTGGGTGTGGAGCTCACCCTTGCACTATATGTGTTGTATGTGTTTGCCTTCCTCCTTGCGATGATCATCCAATCCTTTGGATGTGAACAGCAGGGATTGCTACGTGACACTTTCATCTTCCACCCAAAATTATACGGGTGGAGGCTGTTGTTCGAAGATAGAGGCGTGAGAGGCTGCAACAGGTTTGTGATGGCGCGGAGAAGAACACAAATCTCGCAATTTAAGGCTTTTTGCGAATTATGGTTCATGATTTTTGGAATTGCAGGTTTGAAAAAGTCGGGAAAATGTCGAGATTTAGGGTTCAGGATTAAAGATTTCACGACGCTCTTAAACTACTACGATGATTGTGGCGGTGTTAGGGTTCATGATTTTTGGGATTGTATCTCGCGATTTAGGGTTCACGGTTTGAGATTTCGCCATGCTCTCGAACTATTGCAGTGGTTAATGAGGGTTTTCGCGTGTGGTTCTCTGCGATTTAGTGGTTGTTGCACGTTGATTTGTAAGGTTGAGATGACGGTGGCAGGCTCTAATGACTGA 1221 0.4529 MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGRARLTEGAHLGRRKMNGAVIKLWNFTKGPKTNYEGVSSSKFYRKSAEFTLGASKWRWAPFPAVFQQKFTLGAVVLGVFDPSGAIGEGLQAALSLEVYSVVRDQPCVWSGETPRQWLCKVVKATTSAQPAPALYTFLDDYFDVFYEINVHVYEDLQVYVGVELTLALYVLYVFAFLLAMIIQSFGCEQQGLLRDTFIFHPKLYGWRLLFEDRGVRGCNRFVMARRRTQISQFKAFCELWFMIFGIAGLKKSGKCRDLGFRIKDFTTLLNYYDDCGGVRVHDFWDCISRFRVHGLRFRHALELLQWLMRVFACGSLRFSGCCTLICKVEMTVAGSND 406
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu8g00750 406 Gene3D - 5 86 IPR023407 -
Vimu8g00750 406 FunFam 40S ribosomal protein S27 1 86 - -
Vimu8g00750 406 Pfam Ribosomal protein S27 30 79 IPR000592 GO:0003735|GO:0005840|GO:0006412
Vimu8g00750 406 Hamap 30S ribosomal protein S27e [rps27e]. 24 94 IPR000592 GO:0003735|GO:0005840|GO:0006412
Vimu8g00750 406 SUPERFAMILY Zn-binding ribosomal proteins 30 81 IPR011332 GO:0006412
Vimu8g00750 406 PANTHER 40S RIBOSOMAL PROTEIN S27 1 80 IPR000592 GO:0003735|GO:0005840|GO:0006412
Vimu8g00750 406 ProSitePatterns Ribosomal protein S27e signature. 38 70 IPR000592 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu8g00750 Vimu-Chr8 14346813 14355164 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu8g00750 1 84 Cytoplasmic Ribosomal Protein Gene Family AT3G61110 90.476 4.24e-51 164
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu8g00750 K02978 - cmos:111455834 160.999