Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu8g00742 ATGGAGCCGGAGTATTTTATGACTGGAGGGTTATCAGCTAAATCAGATGTATACTCTTTTGGGTTGGTAATGTTAGAGATTTTGTGTAGGAAGGAAGCCTGTTTTTTAACCCCAGGTGGAGAATGTGAGTACCTTGCTAAGTGGGCCTTTGATAATGAAAGGAAGGGGGTTCTTGAGAAGATTGTTGACCCATCTCTCATTGGAAAAATAGAACCTGCTTGTTGGAAAGTGTTCATTGAGATTGTTCAGAGATGTTTGGCATCAGTTGAAGAGAGGCCAACGATGGGTGAAGTGGTAGTGATTCTTGAAAATGCATTTCTGTTACAAGAGAGAGCAGATGTGTGA 345 0.4145 MEPEYFMTGGLSAKSDVYSFGLVMLEILCRKEACFLTPGGECEYLAKWAFDNERKGVLEKIVDPSLIGKIEPACWKVFIEIVQRCLASVEERPTMGEVVVILENAFLLQERADV 114
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu8g00742 114 PANTHER OS07G0166700 PROTEIN 1 109 IPR045272 GO:0004714|GO:0006468
Vimu8g00742 114 Pfam Protein tyrosine and serine/threonine kinase 1 100 IPR001245 GO:0004672|GO:0006468
Vimu8g00742 114 Gene3D Transferase(Phosphotransferase) domain 1 1 112 - -
Vimu8g00742 114 ProSiteProfiles Protein kinase domain profile. 1 107 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu8g00742 114 SUPERFAMILY Protein kinase-like (PK-like) 3 101 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu8g00742 Vimu-Chr8 14278806 14280319 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu8g00742 1 113 Receptor kinase-like Gene Family AT3G51550 48.246 2.17e-26 100
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CrRLK1L-1 Vimu8g00742 PK_Tyr_Ser-Thr 5.9e-07 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu8g00742 - - var:108344519 221.476